Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_E17
(890 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0261 + 27978341-27978391,27978539-27978683,27978794-279788... 31 0.93
11_01_0430 + 3294482-3295299,3296038-3296386 31 1.2
04_03_0703 - 18870287-18871351,18871542-18871733 31 1.6
01_06_0919 - 32993752-32993856,32994383-32994592,32994666-329952... 31 1.6
02_05_0602 + 30283893-30284170,30286259-30286305,30286534-302875... 30 2.8
12_01_0239 - 1793612-1793716,1793808-1793826,1794424-1794599,179... 29 6.6
11_01_0242 - 1862106-1862210,1862302-1862320,1863082-1863257,186... 29 6.6
09_02_0384 - 8294914-8297817 29 6.6
05_04_0320 + 20181560-20182063,20182513-20182853,20183159-201838... 29 6.6
03_02_0936 - 12528336-12528379,12528516-12528602,12528696-125288... 29 6.6
>01_06_0261 +
27978341-27978391,27978539-27978683,27978794-27978861,
27979630-27980073,27980163-27980681,27981002-27981214,
27981650-27981805,27982753-27982941
Length = 594
Score = 31.5 bits (68), Expect = 0.93
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +2
Query: 686 NGMTNNEQDYELCFRAENVVLPRGGHFGLSAATGG 790
NG + + L ++N + P+GGH+GLS+A GG
Sbjct: 291 NGYGDCDISDNLTDNSKNSLSPQGGHYGLSSAGGG 325
>11_01_0430 + 3294482-3295299,3296038-3296386
Length = 388
Score = 31.1 bits (67), Expect = 1.2
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
Frame = +2
Query: 599 DVCATSGNKPFPTRAKIEYYMNTLTVYFHNGMTNNEQDYELCFRAENVVLPRG-----GH 763
D +G P+P R +I + + H+G N +A NV+L G
Sbjct: 191 DAAGAAGQLPWPARLRIARGVAAALAFLHHG--NETAILHRDIKASNVLLDEGFEAKLAD 248
Query: 764 FGLS-AATGGLADDH 805
FGL+ A GG A+ H
Sbjct: 249 FGLARIAAGGAAESH 263
>04_03_0703 - 18870287-18871351,18871542-18871733
Length = 418
Score = 30.7 bits (66), Expect = 1.6
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -1
Query: 758 RPGAAPRSRRGSTARSPARCSSFRCGSRQLTCS 660
R A P S ST+ S ARC CG+R+ T S
Sbjct: 240 RAAAGPPSTGSSTSMSRARCCGSACGTRRSTWS 272
>01_06_0919 -
32993752-32993856,32994383-32994592,32994666-32995220,
32995705-32995926,32996381-32996511,32997456-32998353,
32998453-32998530,32998612-32998683,32998728-32998763,
32999413-33000353,33000531-33000659,33000751-33000894,
33000994-33001060,33002434-33002502,33003144-33003278
Length = 1263
Score = 30.7 bits (66), Expect = 1.6
Identities = 18/63 (28%), Positives = 30/63 (47%)
Frame = +1
Query: 439 EVFGSSDKWNGLGVIFDSFDNDNKHNNPYIMAVVNDGTKVFDHKSDGTTQLLSGCLRDFR 618
E+F + + W+ D H+ +M +N+G + FDH D + +LLS DF
Sbjct: 91 EIFENKENWSNYS------HTDPSHSQMDVMVELNNGGESFDHSEDTSYRLLS---NDFL 141
Query: 619 EQA 627
E +
Sbjct: 142 ENS 144
>02_05_0602 +
30283893-30284170,30286259-30286305,30286534-30287510,
30287611-30287920,30288561-30290197
Length = 1082
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = -1
Query: 734 RRGSTARSPARCSSFRCGSRQLTCSCSILSWPGSGTA-CSLKSRR 603
RRG+ A P CS R G R + S+ G A CS+ +R
Sbjct: 2 RRGAAASVPTACSEMRYGRRMVQLGASVSVMQGGRRARCSVAPQR 46
>12_01_0239 -
1793612-1793716,1793808-1793826,1794424-1794599,
1794701-1794747,1795760-1796291
Length = 292
Score = 28.7 bits (61), Expect = 6.6
Identities = 18/49 (36%), Positives = 21/49 (42%)
Frame = -2
Query: 346 PPTSQS*WAVWSI*PPSGFEATARDGRSXPDAIAFPPYSQNGTDPSFCA 200
PP+SQ A + PPS A G P A P GTDP+ A
Sbjct: 80 PPSSQPYGAPYGAPPPSSAPYGAPGGYGSPFASLVPSAFPPGTDPNVVA 128
>11_01_0242 -
1862106-1862210,1862302-1862320,1863082-1863257,
1863359-1863405,1864443-1865022
Length = 308
Score = 28.7 bits (61), Expect = 6.6
Identities = 18/49 (36%), Positives = 21/49 (42%)
Frame = -2
Query: 346 PPTSQS*WAVWSI*PPSGFEATARDGRSXPDAIAFPPYSQNGTDPSFCA 200
PP+SQ A + PPS A G P A P GTDP+ A
Sbjct: 96 PPSSQPYGAPYGAPPPSSAPYGAPGGYGSPFASLVPSAFPPGTDPNVVA 144
>09_02_0384 - 8294914-8297817
Length = 967
Score = 28.7 bits (61), Expect = 6.6
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -3
Query: 174 CIQNVCAPIACLH*QIGTNKNAHTINLKFKNSIATLPCETRSSQNL 37
C+ + IACL G KN +NL + N + +P SS ++
Sbjct: 588 CLNLADSHIACLPENFGDLKNLRFLNLSYTNHLRNIPSGVISSLSM 633
>05_04_0320 +
20181560-20182063,20182513-20182853,20183159-20183819,
20183954-20184112
Length = 554
Score = 28.7 bits (61), Expect = 6.6
Identities = 19/66 (28%), Positives = 32/66 (48%)
Frame = -3
Query: 471 TVPFVRRAEHFAGVVASLCGIPECQAVSTYSASAGNLEHDIDLPPVKVNGLFGPYSPLLA 292
TV E +++ C + + + + T NL DI+ V + +F PY+PL+
Sbjct: 179 TVDLKHELEQLLLLISGRCLLGK-EVMGTKFDEVCNLFRDIE-GGVNLMSVFFPYTPLIP 236
Query: 291 SKRRRE 274
S RRR+
Sbjct: 237 SNRRRD 242
>03_02_0936 -
12528336-12528379,12528516-12528602,12528696-12528809,
12528895-12529120,12529200-12529523,12529603-12529773,
12529870-12530100,12530291-12530479,12531176-12531178
Length = 462
Score = 28.7 bits (61), Expect = 6.6
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = -3
Query: 456 RRAEHFAGVVASLCGIPECQAVSTYSASAGNLEHDIDLPPVKVNGLFGPYSPLLASK 286
R + FAG+ CG V +A AG L+H L +N ++ LASK
Sbjct: 82 RYLDAFAGIATVCCGHCHPDVVGAIAAQAGRLQHSTVL---YLNHAIADFAEALASK 135
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,382,138
Number of Sequences: 37544
Number of extensions: 575625
Number of successful extensions: 1856
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1854
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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