Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_E16
         (882 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.08c |yam8|ehs1|calcium transport protein|Schizosaccharom...    29   1.2  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   6.2  
SPCP1E11.10 |||ankyrin repeat protein, unknown biological role|S...    26   8.2  

>SPAC1F5.08c |yam8|ehs1|calcium transport
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -2

Query: 707 PSSFIHFSNNSATKVS-GVHVLKSAFGIHFLFISVSNVTGII 585
           P S++ +S  S+  +  G    K+ +G+ F +  VSNVTG+I
Sbjct: 409 PCSYLCYSLASSCPLDLGFACPKAGYGLEFSYGEVSNVTGLI 450


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -1

Query: 132  HAGSTQCPTTTVHDDSTGSHYNVFSRSTNQNLKEFPIVN 16
            HA S+   T+  H DS  S +   SRS+++  K+  IV+
Sbjct: 1315 HADSSSTRTSLAHQDSRKSLHRHLSRSSSRASKKPSIVS 1353


>SPCP1E11.10 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 207

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 17/72 (23%), Positives = 35/72 (48%)
 Frame = -1

Query: 357 LLAEVLSGVSASPATRNAYNSIHFLTL*GVSKLVHDMIFLFNP*SVFRDSNVKISFFVGI 178
           +L  + SG+S + A  N Y  IH     G S L+  ++      ++ RD + +   FV  
Sbjct: 20  VLKHLDSGISPNAADENGYTPIHAAVSYGHSDLLKILVERGGDINI-RDQDGETPLFVCE 78

Query: 177 QINVSDPIIKRF 142
           ++ ++  +I ++
Sbjct: 79  KLEIAHDLINQY 90


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,416,071
Number of Sequences: 5004
Number of extensions: 67452
Number of successful extensions: 195
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)