Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_E16
(882 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0721 - 5255422-5255790,5256287-5256660,5256845-5257192,525... 30 2.1
11_03_0096 + 9956702-9956818,9957056-9957265 30 2.8
12_02_0244 - 16241243-16241279,16241781-16241848,16241930-162420... 29 3.7
08_02_1209 - 25311892-25312170,25312254-25312483,25313081-25313426 29 3.7
09_02_0504 - 10013784-10014041,10014558-10014660,10014932-100150... 29 4.9
01_06_1088 - 34439311-34439987,34440080-34440136,34442790-344429... 29 4.9
04_04_0465 + 25427065-25427113,25428099-25428227,25428387-254284... 29 6.5
02_05_0938 + 32901143-32901215,32901841-32901982,32902243-329023... 28 8.6
01_01_1195 - 9567023-9567789,9567871-9568120 28 8.6
>06_01_0721 -
5255422-5255790,5256287-5256660,5256845-5257192,
5257369-5257497,5257585-5257658,5257745-5257816,
5257901-5257969,5258059-5258130,5258208-5258279,
5258512-5258583,5258735-5258806,5258887-5258958,
5259050-5259121,5259203-5259274,5259427-5259498,
5259599-5259670,5259764-5259832,5260072-5260143,
5260428-5260499,5260579-5260650,5260919-5260990,
5261015-5261161,5261249-5261378,5262212-5262290
Length = 931
Score = 30.3 bits (65), Expect = 2.1
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = -2
Query: 695 IHFSNNSATKVSGVHVLKSAFGIHFLFISVSNVTGIIATANEFS 564
++ NN+ T V L + F ++ L +S +N+ G++ T N FS
Sbjct: 454 LNLKNNNIT--GDVSSLMNCFSLNILNVSYNNLAGVVPTDNNFS 495
>11_03_0096 + 9956702-9956818,9957056-9957265
Length = 108
Score = 29.9 bits (64), Expect = 2.8
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Frame = +1
Query: 82 GRIVVYGGR----GALGAACVNHFKSFNYWV-ANIDLNPNEKADFNITVPKDASWVEQED 246
GR GGR G + AA + +YW + P+ N+ V + + E+
Sbjct: 13 GRAATLGGRRQLAGQVQAAARRRGHAASYWTWGSRSACPSTHGSQNVAVEMEEEEGQMEE 72
Query: 247 HVVNELG 267
HVV ELG
Sbjct: 73 HVVQELG 79
>12_02_0244 -
16241243-16241279,16241781-16241848,16241930-16242032,
16242095-16242256,16242305-16242369,16242547-16242612,
16242738-16242829,16243029-16243134,16243231-16243279,
16243387-16243540,16243661-16243687,16243797-16243959,
16244621-16244701
Length = 390
Score = 29.5 bits (63), Expect = 3.7
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -1
Query: 672 HKGQRSPCTEVRFWHPFSVHFCIQCNR 592
++ RS C ++R W + H CI C +
Sbjct: 136 YEKSRSSCVQIRNWFDYRNHICIVCEK 162
>08_02_1209 - 25311892-25312170,25312254-25312483,25313081-25313426
Length = 284
Score = 29.5 bits (63), Expect = 3.7
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +1
Query: 481 PGMIGYGMAKAAVHQLTK--SLGAKDSGLPENSLAVAIMPVTLDTE-MNRKWM 630
PG GY +K+A+H TK +L G+ NS+A I + + +KW+
Sbjct: 175 PGSTGYAASKSAMHYATKLMALELGAYGIRVNSIAPGIFKSEITAPLLQKKWL 227
>09_02_0504 -
10013784-10014041,10014558-10014660,10014932-10015093,
10015416-10015549,10015633-10015716,10015839-10016129,
10016362-10016694,10016823-10016965,10017273-10017429,
10017513-10017616,10017728-10017888,10017971-10018287,
10018396-10018677,10018759-10019226,10019338-10019391,
10019689-10019742,10019943-10020021,10020108-10020196,
10021153-10021273,10022321-10022637
Length = 1236
Score = 29.1 bits (62), Expect = 4.9
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = +1
Query: 484 GMIGYGMAKAAVHQLTKSLGAKDSGLPENS-LAVAIMPVTLDTEMNRKWMPKADFSTWTP 660
G + Y + V + KS+G K PE +A + VT + + W+ D + P
Sbjct: 360 GQVVYNGPRDHVLEFFKSVGFK---CPERKCVADFLQEVTSRKDQKQYWIGSDDTYQYVP 416
Query: 661 LTFVAELFEKW 693
+T +AE F+ +
Sbjct: 417 VTMIAEAFQSF 427
>01_06_1088 -
34439311-34439987,34440080-34440136,34442790-34442919,
34443499-34443740,34443857-34444008,34444381-34444461,
34444547-34444612,34444692-34444763,34444843-34444984,
34445146-34445645,34446625-34447192,34447248-34447257
Length = 898
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +1
Query: 631 PKADFSTWTPLTFVAELFEKWMKDEGRPA 717
P+A FS ++P +F++ +F W +GR A
Sbjct: 295 PQALFSNFSPPSFLSSMFHNWFLRKGRRA 323
>04_04_0465 +
25427065-25427113,25428099-25428227,25428387-25428479,
25428681-25428953,25429037-25429288,25429735-25430118,
25430243-25430483,25431986-25432736
Length = 723
Score = 28.7 bits (61), Expect = 6.5
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = +1
Query: 304 CVAGGWAGGNAAKDLSKQADLMWRQSVWSSSIAAT 408
C +G + GG + ++A W WS AAT
Sbjct: 592 CTSGSFGGGGGEEYEDEEASSPWNNRSWSHDFAAT 626
>02_05_0938 +
32901143-32901215,32901841-32901982,32902243-32902314,
32902573-32902644,32902711-32902782,32902913-32902948,
32903001-32903072,32903319-32903387,32903483-32903554,
32903668-32903739,32903838-32903909,32904153-32904224,
32904470-32904541,32904623-32904694,32904782-32904853,
32904911-32905003,32905150-32905218,32905315-32905386,
32905479-32905552,32905643-32905771,32905966-32906331,
32906584-32906954,32907522-32907890
Length = 884
Score = 28.3 bits (60), Expect = 8.6
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = -2
Query: 686 SNNSATKVSGVHVLKSAFGIHFLFISVSNVTGIIATANEFS 564
SNN VS L + F ++ L +S +N+ GI+ T N FS
Sbjct: 406 SNNITGDVSS---LINCFSLNVLNVSYNNLAGIVPTDNNFS 443
>01_01_1195 - 9567023-9567789,9567871-9568120
Length = 338
Score = 28.3 bits (60), Expect = 8.6
Identities = 15/43 (34%), Positives = 18/43 (41%)
Frame = +1
Query: 214 PKDASWVEQEDHVVNELGNALQGQKVNAIICVAGGWAGGNAAK 342
P A+ E+ED VV E G V +C G W AK
Sbjct: 17 PATAAVGEEEDEVVEETEEGGHGGGVQGKLCARGHWRPAEDAK 59
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,326,760
Number of Sequences: 37544
Number of extensions: 466244
Number of successful extensions: 1270
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1269
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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