Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_E16
         (882 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    26   0.53 
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    26   0.53 
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    23   2.8  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   8.6  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 25.8 bits (54), Expect = 0.53
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = +1

Query: 496 YGMAKAAVHQLTKSLGAKDSGLPENSLAVAIMPVTLDTEMNRKWM 630
           Y  +K A+  LT  L ++ +    N   ++I P  ++T+M  +W+
Sbjct: 161 YLASKCALTTLTDCLRSELAQCESNIKVISISPDLVETDMTAQWL 205


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 25.8 bits (54), Expect = 0.53
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +3

Query: 420 VLKHWWFVGFNW 455
           + KH WF GFNW
Sbjct: 620 IQKHKWFDGFNW 631


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 148 FNYWVANIDLNPNEKADFNITVPKDASWVE 237
           FN +VA+I+    E  DF + +    SW+E
Sbjct: 15  FNIFVADINSINVEDMDFRVDMFVRQSWIE 44


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 5/8 (62%), Positives = 6/8 (75%)
 Frame = +3

Query: 102 WSWGIGCC 125
           W WG+G C
Sbjct: 100 WQWGLGIC 107


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,807
Number of Sequences: 438
Number of extensions: 4726
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)