Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_E15
         (886 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyc...    40   5e-04
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|...    27   2.7  
SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor c...    27   4.7  
SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces pomb...    27   4.7  
SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr 3|||...    27   4.7  
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p...    26   8.2  

>SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 288

 Score = 39.9 bits (89), Expect = 5e-04
 Identities = 17/41 (41%), Positives = 25/41 (60%)
 Frame = +2

Query: 647 NPDVDTSFLPDREREEADLKLREELRLEWVMTQASLKDEPI 769
           +P  DTSFLPD ERE  +   R E R +W+  Q  ++++ I
Sbjct: 99  DPSADTSFLPDAEREIRENAKRAEYRKQWLKEQEQIREKEI 139


>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 927

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
 Frame = +2

Query: 155 VKNLIKR-TMAHYKGAASEAGRAMHLMKKREKAQQEIELRKKKIEEDLKIDN--IENKFA 325
           +K++++R T    KG  S   +A     K EKA+ + + +KK  +E +   +   E+K  
Sbjct: 63  IKDIVQRPTDTQLKGQDSNHKKASLTETKTEKAKVKPKAKKKNSKEKISKSSKQDEHKTD 122

Query: 326 THYDAVEQQLKSSTIGLVTLDEMKAKQE 409
            H ++V  +L  +       DE  AK+E
Sbjct: 123 VHKESV-SKLSKNLESRNNRDENSAKRE 149


>SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor
           complex subunit Rrn5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 556

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = +2

Query: 242 EKAQQEIELRKKKIEEDLKIDNIENKFATHYDAVEQQLKSSTIGLVTLDEMKAKQE 409
           E +Q  I+  +K  E  L+  NI     +HY+A   + K+S   L   +EM+   E
Sbjct: 147 EMSQNWIDWEEKIAERLLEGSNISGVETSHYNAQSVKNKTSNEDLFDTNEMRKISE 202


>SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 323

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 10/40 (25%), Positives = 23/40 (57%)
 Frame = +2

Query: 242 EKAQQEIELRKKKIEEDLKIDNIENKFATHYDAVEQQLKS 361
           E   + +E++++ I  + +ID +E K    + ++EQ+  S
Sbjct: 153 EMKVEMVEMKRETIRLNTRIDLLEQKTEARFQSIEQRFNS 192


>SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 247

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 10/40 (25%), Positives = 23/40 (57%)
 Frame = +2

Query: 242 EKAQQEIELRKKKIEEDLKIDNIENKFATHYDAVEQQLKS 361
           E   + +E++++ I  + +ID +E K    + ++EQ+  S
Sbjct: 153 EMKVEMVEMKRETIRLNTRIDLLEQKTEARFQSIEQRFNS 192


>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 202

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 17/62 (27%), Positives = 32/62 (51%)
 Frame = +2

Query: 191 KGAASEAGRAMHLMKKREKAQQEIELRKKKIEEDLKIDNIENKFATHYDAVEQQLKSSTI 370
           K +  E+ +     KK+EK +++ +L+KK   + LK+D+   +        ++  KSS  
Sbjct: 132 KTSGKESSKREKSKKKKEKKEKKDKLKKK--SKRLKLDDSHTQKRKRKVRDKESKKSSKS 189

Query: 371 GL 376
           GL
Sbjct: 190 GL 191


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,053,377
Number of Sequences: 5004
Number of extensions: 27051
Number of successful extensions: 120
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)