Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_E15
         (886 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75530-2|CAA99795.2|  351|Caenorhabditis elegans Hypothetical pr...    66   3e-11
U41559-4|AAC24257.1|  413|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AC024751-13|AAK21512.2|  488|Caenorhabditis elegans Hypothetical...    29   3.3  
U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical pr...    29   4.4  
Z69787-10|CAH65466.1|  398|Caenorhabditis elegans Hypothetical p...    29   5.8  
Z92828-5|CAB07332.2|  586|Caenorhabditis elegans Hypothetical pr...    28   7.7  
Z71266-12|CAA95848.1| 1938|Caenorhabditis elegans Hypothetical p...    28   7.7  
Z71261-8|CAA95806.1| 1938|Caenorhabditis elegans Hypothetical pr...    28   7.7  
Z71181-6|CAA94899.1|  647|Caenorhabditis elegans Hypothetical pr...    28   7.7  
X08065-1|CAA30854.1| 1938|Caenorhabditis elegans myosin 1 protein.     28   7.7  
EF378622-1|ABN54457.1| 1492|Caenorhabditis elegans enhancer of g...    28   7.7  
AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical ...    28   7.7  
AF468834-1|AAL77082.1|  586|Caenorhabditis elegans PRY-1 protein.      28   7.7  

>Z75530-2|CAA99795.2|  351|Caenorhabditis elegans Hypothetical
           protein C47E8.4 protein.
          Length = 351

 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 33/76 (43%), Positives = 53/76 (69%), Gaps = 2/76 (2%)
 Frame = +2

Query: 191 KGAASEAGRAMHLMKKREKAQQEIELRKKKIEEDLKIDN--IENKFATHYDAVEQQLKSS 364
           K + ++ GR +HL KKRE+ +++IE + +K+EED +     I NKF  +Y+ VE+ +KS 
Sbjct: 25  KMSRADEGRLIHLAKKREREKEDIEQQLRKLEEDKEKCRVGITNKFMANYETVEEVVKSK 84

Query: 365 TIGLVTLDEMKAKQEH 412
           T GLV+LD+MK  Q++
Sbjct: 85  TYGLVSLDDMKNIQKN 100



 Score = 45.6 bits (103), Expect = 5e-05
 Identities = 22/41 (53%), Positives = 28/41 (68%)
 Frame = +2

Query: 647 NPDVDTSFLPDREREEADLKLREELRLEWVMTQASLKDEPI 769
           +P VDTSFLPD+EREE   K +E L  EW + Q + K+E I
Sbjct: 167 DPTVDTSFLPDKEREEFLRKKKESLAAEWRVKQDAEKNEEI 207



 Score = 33.1 bits (72), Expect = 0.27
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 772 VXFSYWDGSGHRRIVTXKKGXPXSXSXNGXLDXLR 876
           V ++YWDGS HR+ +  KKG   S      ++ L+
Sbjct: 209 VAYAYWDGSSHRKNMKIKKGNTISQCLGRAIEALK 243


>U41559-4|AAC24257.1|  413|Caenorhabditis elegans Hypothetical
           protein C26B2.1 protein.
          Length = 413

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 20/68 (29%), Positives = 36/68 (52%)
 Frame = +2

Query: 191 KGAASEAGRAMHLMKKREKAQQEIELRKKKIEEDLKIDNIENKFATHYDAVEQQLKSSTI 370
           KG + +A  A HL K +   QQ ++ RKK +  ++  + ++    T    +E ++K  T 
Sbjct: 148 KGKSGKAWTAFHL-KDKFGFQQMVDKRKKALAPEM--NPVDAHAPTEAPTLEDEIKERTD 204

Query: 371 GLVTLDEM 394
            L TLD++
Sbjct: 205 DLRTLDQI 212


>AC024751-13|AAK21512.2|  488|Caenorhabditis elegans Hypothetical
           protein Y18H1A.9 protein.
          Length = 488

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +2

Query: 203 SEAGRAMHLMKKREKAQQEI-ELRKKKIEEDLKIDNIE 313
           SEAG+ +H+M   EK QQ + EL    I+  + ID+++
Sbjct: 54  SEAGKEVHVMISDEKTQQFMKELDDHSIKHSVMIDDVQ 91


>U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical protein
            F58G4.1 protein.
          Length = 1974

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/64 (21%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
 Frame = +2

Query: 230  MKKREKAQQEIELRKKKIEEDLKI-DNIENKFATHYDAVEQQLKSSTIGLVTLDEMKAKQ 406
            +++ ++ +Q+ E +++K+E +LKI   +  +   H    EQ +K   I L ++      +
Sbjct: 1048 LEREKRGRQDCEKQRRKVEGELKIAQELIEELNRHKHEQEQVIKKKDIELSSIQSRLEDE 1107

Query: 407  EHIV 418
            + +V
Sbjct: 1108 QSLV 1111


>Z69787-10|CAH65466.1|  398|Caenorhabditis elegans Hypothetical
           protein C44C10.11 protein.
          Length = 398

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
 Frame = +2

Query: 167 IKRTMAHYKGAASEAGRAMHLMKKREKAQQEIELRKK---KIEEDLKIDNIENKFATHYD 337
           +K  MA        A R +  +KK  K +QE++++     K+E+++K +N  N+  +   
Sbjct: 199 LKNKMAQKSDETDSAYRMILELKK--KHEQELQMKNSTIMKLEDNVKFNNSSNEQFSKMT 256

Query: 338 AVEQQLK 358
              QQLK
Sbjct: 257 TENQQLK 263


>Z92828-5|CAB07332.2|  586|Caenorhabditis elegans Hypothetical
           protein C37A5.9 protein.
          Length = 586

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 19/64 (29%), Positives = 30/64 (46%)
 Frame = +2

Query: 200 ASEAGRAMHLMKKREKAQQEIELRKKKIEEDLKIDNIENKFATHYDAVEQQLKSSTIGLV 379
           +SE+GR    M+   K  + I+  K   E + +ID+IE    T  D V     +  +G +
Sbjct: 271 SSESGRRNFAMEITRKLLRHIDKVKLNDEMEKRIDDIEECRYTTIDMVNGTEPNDDLGKI 330

Query: 380 TLDE 391
             DE
Sbjct: 331 DEDE 334


>Z71266-12|CAA95848.1| 1938|Caenorhabditis elegans Hypothetical
            protein R06C7.10 protein.
          Length = 1938

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 22/59 (37%), Positives = 28/59 (47%)
 Frame = +2

Query: 227  LMKKREKAQQEIELRKKKIEEDLKIDNIENKFATHYDAVEQQLKSSTIGLVTLDEMKAK 403
            L K+R KAQQE+E  KK IE    +D    K      A E Q+ S    + + DE   K
Sbjct: 943  LEKQRRKAQQEVENLKKSIE---AVDGNLAKSLEEKAAKENQIHSLQDEMNSQDETIGK 998


>Z71261-8|CAA95806.1| 1938|Caenorhabditis elegans Hypothetical protein
            R06C7.10 protein.
          Length = 1938

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 22/59 (37%), Positives = 28/59 (47%)
 Frame = +2

Query: 227  LMKKREKAQQEIELRKKKIEEDLKIDNIENKFATHYDAVEQQLKSSTIGLVTLDEMKAK 403
            L K+R KAQQE+E  KK IE    +D    K      A E Q+ S    + + DE   K
Sbjct: 943  LEKQRRKAQQEVENLKKSIE---AVDGNLAKSLEEKAAKENQIHSLQDEMNSQDETIGK 998


>Z71181-6|CAA94899.1|  647|Caenorhabditis elegans Hypothetical
           protein K07C5.6 protein.
          Length = 647

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 223 ASDEKKRKSTARNRITQKEDRRRSQNRQ 306
           + DE+K K   + R+ +KE R R Q R+
Sbjct: 507 SDDEEKEKEREKERLIEKERRERDQRRR 534


>X08065-1|CAA30854.1| 1938|Caenorhabditis elegans myosin 1 protein.
          Length = 1938

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 22/59 (37%), Positives = 28/59 (47%)
 Frame = +2

Query: 227  LMKKREKAQQEIELRKKKIEEDLKIDNIENKFATHYDAVEQQLKSSTIGLVTLDEMKAK 403
            L K+R KAQQE+E  KK IE    +D    K      A E Q+ S    + + DE   K
Sbjct: 943  LEKQRRKAQQEVENLKKSIE---AVDGNLAKSLEEKAAKENQIHSLQDEMNSQDETIGK 998


>EF378622-1|ABN54457.1| 1492|Caenorhabditis elegans enhancer of
           glp-1 protein.
          Length = 1492

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +2

Query: 194 GAASEAGRAMHLMKKREKAQQEIELRKKKIEEDLKIDNIENK-FATHYDAVEQQLKS 361
           G++ E  +   +++K  + Q +     ++ E DLK DNI NK   T+    E+ +KS
Sbjct: 570 GSSPEELQVRKMIEKVMEMQAQRRKLVEQFEADLKADNISNKLMGTNERGAEEIMKS 626


>AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical
           protein Y53H1C.2a protein.
          Length = 1512

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +2

Query: 194 GAASEAGRAMHLMKKREKAQQEIELRKKKIEEDLKIDNIENK-FATHYDAVEQQLKS 361
           G++ E  +   +++K  + Q +     ++ E DLK DNI NK   T+    E+ +KS
Sbjct: 590 GSSPEELQVRKMIEKVMEMQAQRRKLVEQFEADLKADNISNKLMGTNERGAEEIMKS 646


>AF468834-1|AAL77082.1|  586|Caenorhabditis elegans PRY-1 protein.
          Length = 586

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 19/64 (29%), Positives = 30/64 (46%)
 Frame = +2

Query: 200 ASEAGRAMHLMKKREKAQQEIELRKKKIEEDLKIDNIENKFATHYDAVEQQLKSSTIGLV 379
           +SE+GR    M+   K  + I+  K   E + +ID+IE    T  D V     +  +G +
Sbjct: 271 SSESGRRNFAMEITRKLLRHIDKVKLNDEMEKRIDDIEECRYTTIDMVNGTEPNDDLGKI 330

Query: 380 TLDE 391
             DE
Sbjct: 331 DEDE 334


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,293,412
Number of Sequences: 27780
Number of extensions: 156445
Number of successful extensions: 856
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)