Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_E14
(1333 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 37 0.007
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 36 0.013
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 33 0.089
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 33 0.089
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 31 0.36
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 31 0.36
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 30 0.83
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 29 1.4
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 29 1.4
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 36.7 bits (81), Expect = 0.007
Identities = 17/51 (33%), Positives = 18/51 (35%)
Frame = -2
Query: 684 PXPPAPXVXGXXPIPPPLXXXXXXXXXXXXXXXXXPPPPPXXXPPPPPXPP 532
P PP P V P P P+ PP PPPPP PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 33.5 bits (73), Expect = 0.067
Identities = 14/24 (58%), Positives = 14/24 (58%)
Frame = -1
Query: 703 PPPXXXPPPPGPXGXGXXPXSPPP 632
PPP PPPPG G G P PPP
Sbjct: 761 PPPP--PPPPGVAGAGPPPPPPPP 782
Score = 33.1 bits (72), Expect = 0.089
Identities = 19/54 (35%), Positives = 19/54 (35%)
Frame = -1
Query: 703 PPPXXXPPPPGPXGXGXXPXSPPPXXXXXPXXXXXXXXXXXPPPPPXXXPPPPP 542
PPP P P P P P P P PPPP PPPPP
Sbjct: 735 PPPAVIVPTPAPAPIPVPP--PAPIMGGPPPPPPPPGVAGAGPPPP---PPPPP 783
Score = 27.5 bits (58), Expect = 4.4
Identities = 14/50 (28%), Positives = 14/50 (28%)
Frame = -1
Query: 703 PPPXXXPPPPGPXGXGXXPXSPPPXXXXXPXXXXXXXXXXXPPPPPXXXP 554
P P PPP P G PPP P P P P
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEP 803
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 35.9 bits (79), Expect = 0.013
Identities = 22/59 (37%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Frame = +3
Query: 534 GXXGGGGGXXXGGGG--GXXXXXXXXXXXGXXXXXGGGEXGXXPKPXGPGGGGXXXGGG 704
G GG GG G GG G G GGG G P G GGG GGG
Sbjct: 192 GFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGG 250
Score = 32.3 bits (70), Expect = 0.16
Identities = 20/62 (32%), Positives = 20/62 (32%)
Frame = +3
Query: 534 GXXGGGGGXXXGGGGGXXXXXXXXXXXGXXXXXGGGEXGXXPKPXGPGGGGXXXGGGXXS 713
G GGG G GG GG G G G GPGG GG
Sbjct: 184 GHNGGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGG 243
Query: 714 PG 719
PG
Sbjct: 244 PG 245
Score = 30.7 bits (66), Expect = 0.47
Identities = 19/51 (37%), Positives = 19/51 (37%)
Frame = +3
Query: 534 GXXGGGGGXXXGGGGGXXXXXXXXXXXGXXXXXGGGEXGXXPKPXGPGGGG 686
G GGG G GG GG G GGG G P G GG G
Sbjct: 224 GGFGGGPGGFEGGPGGFGGGPGGFG--GGLGGFGGGPGGFGGGPGGHGGPG 272
Score = 30.3 bits (65), Expect = 0.63
Identities = 20/62 (32%), Positives = 20/62 (32%)
Frame = +3
Query: 534 GXXGGGGGXXXGGGGGXXXXXXXXXXXGXXXXXGGGEXGXXPKPXGPGGGGXXXGGGXXS 713
G GG GG GG G GGG G G GGG GGG
Sbjct: 208 GGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGG 267
Query: 714 PG 719
G
Sbjct: 268 HG 269
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 33.1 bits (72), Expect = 0.089
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -2
Query: 579 PPPPPXXXPPPPPXPP 532
PPPPP PPPP PP
Sbjct: 1707 PPPPPMSVPPPPSAPP 1722
Score = 29.5 bits (63), Expect = 1.1
Identities = 12/25 (48%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Frame = -1
Query: 703 PPPXXXPPPP-GPXGXGXXPXSPPP 632
PPP PPPP P P +PPP
Sbjct: 1709 PPPMSVPPPPSAPPMPAGPPSAPPP 1733
Score = 27.9 bits (59), Expect = 3.3
Identities = 13/42 (30%), Positives = 13/42 (30%)
Frame = -1
Query: 658 GXXPXSPPPXXXXXPXXXXXXXXXXXPPPPPXXXPPPPPXXP 533
G P P P PPPP PPPP P
Sbjct: 1680 GMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAP 1721
Score = 26.6 bits (56), Expect = 7.7
Identities = 18/59 (30%), Positives = 18/59 (30%)
Frame = -1
Query: 718 PGDXFPPPXXXPPPPGPXGXGXXPXSPPPXXXXXPXXXXXXXXXXXPPPPPXXXPPPPP 542
P PP P PP P P S PP P PPP P P P
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPP--------SAPPPPLPASSAPSVP 1744
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 33.1 bits (72), Expect = 0.089
Identities = 18/59 (30%), Positives = 18/59 (30%), Gaps = 3/59 (5%)
Frame = -1
Query: 700 PPXXXPPPPGPXGXGXXPXSPPPXXXXXPXXXXXXXXXXXPPPP---PXXXPPPPPXXP 533
PP PPP P P PP P PP P PP PP P
Sbjct: 144 PPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVP 202
Score = 31.9 bits (69), Expect = 0.21
Identities = 20/61 (32%), Positives = 20/61 (32%), Gaps = 3/61 (4%)
Frame = -1
Query: 718 PGDXFPPPXXXPPPPGPXGXGXXPXS-PPPXXXXXPXXXXXXXXXXXP--PPPPXXXPPP 548
P PPP PP P P S PPP P PP P PPP
Sbjct: 145 PRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPP 204
Query: 547 P 545
P
Sbjct: 205 P 205
Score = 28.7 bits (61), Expect = 1.9
Identities = 16/51 (31%), Positives = 16/51 (31%), Gaps = 1/51 (1%)
Frame = -1
Query: 697 PXXXPPPPGPXGXGXXPXSPPPXXXXXPXXXXXXXXXXXPPPP-PXXXPPP 548
P P PP P P S PP P PP P PPP
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPP 174
Score = 27.9 bits (59), Expect = 3.3
Identities = 18/61 (29%), Positives = 19/61 (31%), Gaps = 4/61 (6%)
Frame = -2
Query: 702 PPPXXXPXPPAPXVXGXXP--IPPPLXXXXXXXXXXXXXXXXX--PPPPPXXXPPPPPXP 535
PPP PP P P +PPP PP PP PPP
Sbjct: 150 PPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPLSQA 209
Query: 534 P 532
P
Sbjct: 210 P 210
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 31.1 bits (67), Expect = 0.36
Identities = 12/18 (66%), Positives = 12/18 (66%), Gaps = 2/18 (11%)
Frame = -2
Query: 579 PPPPPXXXPP--PPPXPP 532
PPPPP PP PPP PP
Sbjct: 12 PPPPPGFEPPSQPPPPPP 29
Score = 29.1 bits (62), Expect = 1.4
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = -1
Query: 700 PPXXXPPPPGPXGXGXXPXSPPP 632
PP PPPP P G P PPP
Sbjct: 5 PPGNPPPPPPPPGF-EPPSQPPP 26
Score = 27.9 bits (59), Expect = 3.3
Identities = 11/18 (61%), Positives = 11/18 (61%), Gaps = 2/18 (11%)
Frame = -2
Query: 579 PPPPPXXXPPP--PPXPP 532
PPPPP PP PP PP
Sbjct: 11 PPPPPPGFEPPSQPPPPP 28
Score = 27.5 bits (58), Expect = 4.4
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = -1
Query: 718 PGDXFPPPXXXPPPPGPXGXGXXPXSPPP 632
PG+ PPP PPPPG P PPP
Sbjct: 6 PGNP-PPP---PPPPGFEPPSQPPPPPPP 30
Score = 27.5 bits (58), Expect = 4.4
Identities = 11/18 (61%), Positives = 11/18 (61%), Gaps = 3/18 (16%)
Frame = -2
Query: 579 PPPP---PXXXPPPPPXP 535
PPPP P PPPPP P
Sbjct: 13 PPPPGFEPPSQPPPPPPP 30
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 31.1 bits (67), Expect = 0.36
Identities = 18/63 (28%), Positives = 19/63 (30%), Gaps = 1/63 (1%)
Frame = -1
Query: 730 PF*XPGDXFPPPXXXPPPPGPXGXGXXPXSPPPXXXXXPXXXXXXXXXXXPP-PPPXXXP 554
P P P P PP P P +PPP PP P P P
Sbjct: 1033 PIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIP 1092
Query: 553 PPP 545
P P
Sbjct: 1093 PVP 1095
Score = 29.9 bits (64), Expect = 0.83
Identities = 19/64 (29%), Positives = 21/64 (32%), Gaps = 9/64 (14%)
Frame = -2
Query: 699 PPXXXPX---PPAPXVXGXXPIP------PPLXXXXXXXXXXXXXXXXXPPPPPXXXPPP 547
PP P PP P G P+P PP+ PP PP PP
Sbjct: 1140 PPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPP 1199
Query: 546 PPXP 535
P P
Sbjct: 1200 VPKP 1203
Score = 29.1 bits (62), Expect = 1.4
Identities = 18/54 (33%), Positives = 18/54 (33%)
Frame = -1
Query: 703 PPPXXXPPPPGPXGXGXXPXSPPPXXXXXPXXXXXXXXXXXPPPPPXXXPPPPP 542
PPP PP P P G P PP P P P P PP P
Sbjct: 1192 PPPSEAPPVPKP-SVGVPPVPPPSTAPPVP----TPSAGLPPVPVPTAKAPPVP 1240
Score = 28.3 bits (60), Expect = 2.5
Identities = 16/53 (30%), Positives = 16/53 (30%)
Frame = -1
Query: 700 PPXXXPPPPGPXGXGXXPXSPPPXXXXXPXXXXXXXXXXXPPPPPXXXPPPPP 542
P PP P P G P P P P P P P PPP
Sbjct: 1145 PSVAAPPVPAPSGA---PPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPP 1194
Score = 28.3 bits (60), Expect = 2.5
Identities = 19/59 (32%), Positives = 20/59 (33%), Gaps = 4/59 (6%)
Frame = -2
Query: 699 PPXXXPX---PPAPX-VXGXXPIPPPLXXXXXXXXXXXXXXXXXPPPPPXXXPPPPPXP 535
PP P PP P G P+PPP PP PP PP P P
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVPPP-----SEAPPVPKPSVGVPPVPPPSTAPPVPTP 1222
Score = 27.1 bits (57), Expect = 5.8
Identities = 17/52 (32%), Positives = 17/52 (32%)
Frame = -1
Query: 700 PPXXXPPPPGPXGXGXXPXSPPPXXXXXPXXXXXXXXXXXPPPPPXXXPPPP 545
P PP P P G P PP P P PPP PP P
Sbjct: 1174 PSSGIPPVPKPAA-GVPPVPPPSEAPPVP----KPSVGVPPVPPPSTAPPVP 1220
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.9 bits (64), Expect = 0.83
Identities = 17/55 (30%), Positives = 17/55 (30%), Gaps = 2/55 (3%)
Frame = -1
Query: 700 PPXXXP--PPPGPXGXGXXPXSPPPXXXXXPXXXXXXXXXXXPPPPPXXXPPPPP 542
PP P PP P G P PP P PP P P P P
Sbjct: 428 PPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAP 482
Score = 28.7 bits (61), Expect = 1.9
Identities = 17/57 (29%), Positives = 17/57 (29%), Gaps = 1/57 (1%)
Frame = -1
Query: 700 PPXXXPPPPGPXGXGXXPXSPPPXXXXX-PXXXXXXXXXXXPPPPPXXXPPPPPXXP 533
PP PP P P S PP P PP P P PP P
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPP 471
Score = 27.9 bits (59), Expect = 3.3
Identities = 19/63 (30%), Positives = 19/63 (30%), Gaps = 6/63 (9%)
Frame = -1
Query: 703 PPPXXXPPPPGPXGXGXXPXSPPPXXXXXPXXXXXXXXXXXPPPP------PXXXPPPPP 542
PPP PPPP G P P P PPP P PPP
Sbjct: 337 PPP---PPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPP 393
Query: 541 XXP 533
P
Sbjct: 394 AIP 396
Score = 27.9 bits (59), Expect = 3.3
Identities = 18/56 (32%), Positives = 19/56 (33%)
Frame = -2
Query: 702 PPPXXXPXPPAPXVXGXXPIPPPLXXXXXXXXXXXXXXXXXPPPPPXXXPPPPPXP 535
PP P AP + PI PPL P PP PPP P P
Sbjct: 436 PPSLPMGAPAAPPLPPSAPIAPPL---------PAGMPAAPPLPPAAPAPPPAPAP 482
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 29.1 bits (62), Expect = 1.4
Identities = 19/65 (29%), Positives = 19/65 (29%), Gaps = 3/65 (4%)
Frame = -1
Query: 718 PGDXFPPPXXXPPPPGPXGXGXXPXSPPPXXXXXPXXXXXXXXXXXP---PPPPXXXPPP 548
P D PPP PPPP P P P P PPP
Sbjct: 184 PSDYNPPPP-PPPPPAVEDQAADANEPDDYYSSGRAVSPEIPPTYTPKQADPLPAPPPPP 242
Query: 547 PPXXP 533
PP P
Sbjct: 243 PPTLP 247
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 29.1 bits (62), Expect = 1.4
Identities = 21/66 (31%), Positives = 21/66 (31%)
Frame = +3
Query: 534 GXXGGGGGXXXGGGGGXXXXXXXXXXXGXXXXXGGGEXGXXPKPXGPGGGGXXXGGGXXS 713
G GG GG G GG G GGG G G GG GG
Sbjct: 6 GSRGGRGGSRGGRGG--FNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGG 63
Query: 714 PGX*KG 731
G KG
Sbjct: 64 RGGAKG 69
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.157 0.563
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,199,819
Number of Sequences: 5004
Number of extensions: 20479
Number of successful extensions: 283
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 731281504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
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