Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_E13
         (1064 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0424 - 23357012-23357579,23358172-23358211,23358791-233589...    30   2.7  
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943...    30   3.6  

>11_06_0424 -
           23357012-23357579,23358172-23358211,23358791-23358969,
           23359570-23359931
          Length = 382

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 14/40 (35%), Positives = 15/40 (37%)
 Frame = -2

Query: 409 VAXGGTHFWXXACPGAPDPXGFXXAXXXXXPXVGAGXPXW 290
           +A G  H W  A   A DP GF           G G P W
Sbjct: 15  LAVGAWHVWAAAARFAADPRGFRLRAWNPVDVGGGGAPAW 54


>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
            9435445-9435526,9435610-9435660,9435749-9435829,
            9435965-9436006,9436117-9436215,9438130-9438201,
            9438557-9438680,9438850-9439723,9440274-9440456,
            9440941-9442741,9442825-9443049,9443117-9443814,
            9444519-9444591
          Length = 1541

 Score = 29.9 bits (64), Expect = 3.6
 Identities = 24/76 (31%), Positives = 25/76 (32%)
 Frame = -3

Query: 516  GXCPXXXXAXGXRGXLPPPLXSXGPVXESGXPRXGXSXXGGPIFGPGXVRGPQTLXGSXX 337
            G  P      G RG  PPP  + G V     P  G    GGP   PG    P    G   
Sbjct: 1158 GGPPAPPPPAGFRGGTPPP-NAHGGVAPPPPPPRGHGGVGGPPTPPG-APAPPMPPGVPG 1215

Query: 336  LPPXXXHXSGLAHXXG 289
             PP      GL    G
Sbjct: 1216 GPPPPPGGRGLPAPPG 1231


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,367,839
Number of Sequences: 37544
Number of extensions: 277022
Number of successful extensions: 354
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3164520116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)