Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_E13
(1064 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC065237-1|AAH65237.1| 812|Homo sapiens chromosome 13 open read... 33 2.3
AL845154-1|CAI23600.1| 812|Homo sapiens chromosome 13 open read... 33 2.3
AK074894-1|BAC11273.1| 740|Homo sapiens protein ( Homo sapiens ... 33 2.3
AB058705-1|BAB47431.1| 821|Homo sapiens KIAA1802 protein protein. 33 2.3
X15332-1|CAA33387.1| 1078|Homo sapiens alpha-1 (III) collagen pr... 31 9.4
X14420-1|CAA32583.1| 1466|Homo sapiens prepro-alpha-1 type 3 col... 31 9.4
X06700-1|CAA29886.1| 517|Homo sapiens alpha1 (III) collagen pro... 31 9.4
X01655-1|CAA25821.1| 132|Homo sapiens protein ( Human mRNA for ... 31 9.4
BC141863-1|AAI41864.1| 407|Homo sapiens TPRX1 protein protein. 31 9.4
AY016295-2|AAL13167.1| 1466|Homo sapiens type III preprocollagen... 31 9.4
AK097640-1|BAC05130.1| 411|Homo sapiens protein ( Homo sapiens ... 31 9.4
AC066694-1|AAY24164.1| 1466|Homo sapiens unknown protein. 31 9.4
>BC065237-1|AAH65237.1| 812|Homo sapiens chromosome 13 open reading
frame 8 protein.
Length = 812
Score = 32.7 bits (71), Expect = 2.3
Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Frame = +2
Query: 290 PXXXASPDXWXXXGGSXXEPXRVWGPRTXPGP-KMGPPXXDXPXRGXPLSXTGP 448
P SP+ W EP R P PG K GPP P + P + +GP
Sbjct: 281 PSPSESPEPWKPFPAVSPEPRRP-APAVSPGSWKPGPPGSPRPWKSNPSASSGP 333
>AL845154-1|CAI23600.1| 812|Homo sapiens chromosome 13 open reading
frame 8 protein.
Length = 812
Score = 32.7 bits (71), Expect = 2.3
Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Frame = +2
Query: 290 PXXXASPDXWXXXGGSXXEPXRVWGPRTXPGP-KMGPPXXDXPXRGXPLSXTGP 448
P SP+ W EP R P PG K GPP P + P + +GP
Sbjct: 281 PSPSESPEPWKPFPAVSPEPRRP-APAVSPGSWKPGPPGSPRPWKSNPSASSGP 333
>AK074894-1|BAC11273.1| 740|Homo sapiens protein ( Homo sapiens
cDNA FLJ90413 fis, clone NT2RP3000063, weakly similar to
NEUROFILAMENT TRIPLET H PROTEIN. ).
Length = 740
Score = 32.7 bits (71), Expect = 2.3
Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Frame = +2
Query: 290 PXXXASPDXWXXXGGSXXEPXRVWGPRTXPGP-KMGPPXXDXPXRGXPLSXTGP 448
P SP+ W EP R P PG K GPP P + P + +GP
Sbjct: 209 PSPSESPEPWKPFPAVSPEPRRP-APAVSPGSWKPGPPGSPRPWKSNPSASSGP 261
>AB058705-1|BAB47431.1| 821|Homo sapiens KIAA1802 protein protein.
Length = 821
Score = 32.7 bits (71), Expect = 2.3
Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Frame = +2
Query: 290 PXXXASPDXWXXXGGSXXEPXRVWGPRTXPGP-KMGPPXXDXPXRGXPLSXTGP 448
P SP+ W EP R P PG K GPP P + P + +GP
Sbjct: 290 PSPSESPEPWKPFPAVSPEPRRP-APAVSPGSWKPGPPGSPRPWKSNPSASSGP 342
>X15332-1|CAA33387.1| 1078|Homo sapiens alpha-1 (III) collagen
protein.
Length = 1078
Score = 30.7 bits (66), Expect = 9.4
Identities = 23/62 (37%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Frame = -3
Query: 507 PXXXXAXGXRGXL--PPPLXSXGPVXESGXP-RXGXSXXGGPIFGPGXVRGPQTLXGSXX 337
P G +G + P P GPV SG P + G S GPI GP RG + GS
Sbjct: 971 PGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPI-GPPGPRGNRGERGSEG 1029
Query: 336 LP 331
P
Sbjct: 1030 SP 1031
>X14420-1|CAA32583.1| 1466|Homo sapiens prepro-alpha-1 type 3 collagen
protein.
Length = 1466
Score = 30.7 bits (66), Expect = 9.4
Identities = 23/62 (37%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Frame = -3
Query: 507 PXXXXAXGXRGXL--PPPLXSXGPVXESGXP-RXGXSXXGGPIFGPGXVRGPQTLXGSXX 337
P G +G + P P GPV SG P + G S GPI GP RG + GS
Sbjct: 1118 PGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPI-GPPGPRGNRGERGSEG 1176
Query: 336 LP 331
P
Sbjct: 1177 SP 1178
>X06700-1|CAA29886.1| 517|Homo sapiens alpha1 (III) collagen
protein.
Length = 517
Score = 30.7 bits (66), Expect = 9.4
Identities = 23/62 (37%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Frame = -3
Query: 507 PXXXXAXGXRGXL--PPPLXSXGPVXESGXP-RXGXSXXGGPIFGPGXVRGPQTLXGSXX 337
P G +G + P P GPV SG P + G S GPI GP RG + GS
Sbjct: 169 PGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPI-GPPGPRGNRGERGSEG 227
Query: 336 LP 331
P
Sbjct: 228 SP 229
>X01655-1|CAA25821.1| 132|Homo sapiens protein ( Human mRNA for
alpha 1 (III) collagen fragment (aa 892-1023). ).
Length = 132
Score = 30.7 bits (66), Expect = 9.4
Identities = 23/62 (37%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Frame = -3
Query: 507 PXXXXAXGXRGXL--PPPLXSXGPVXESGXP-RXGXSXXGGPIFGPGXVRGPQTLXGSXX 337
P G +G + P P GPV SG P + G S GPI GP RG + GS
Sbjct: 54 PGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPI-GPPGPRGNRGERGSEG 112
Query: 336 LP 331
P
Sbjct: 113 SP 114
>BC141863-1|AAI41864.1| 407|Homo sapiens TPRX1 protein protein.
Length = 407
Score = 30.7 bits (66), Expect = 9.4
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Frame = -3
Query: 477 GXLPPPLXSXGPVX-----ESGXPRXGXSXXGGPIFGPGXVRGPQTLXG-SXXLPPXXXH 316
G +P P+ GP+ + P G GPI PG +R P +L G + L P
Sbjct: 249 GPIPGPISGPGPIIGPIPSPAQIPGPGRLQGPGPILSPGRMRSPGSLPGLAPILGPGSGP 308
Query: 315 XSG 307
SG
Sbjct: 309 GSG 311
>AY016295-2|AAL13167.1| 1466|Homo sapiens type III preprocollagen
alpha 1 chain protein.
Length = 1466
Score = 30.7 bits (66), Expect = 9.4
Identities = 23/62 (37%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Frame = -3
Query: 507 PXXXXAXGXRGXL--PPPLXSXGPVXESGXP-RXGXSXXGGPIFGPGXVRGPQTLXGSXX 337
P G +G + P P GPV SG P + G S GPI GP RG + GS
Sbjct: 1118 PGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPI-GPPGPRGNRGERGSEG 1176
Query: 336 LP 331
P
Sbjct: 1177 SP 1178
>AK097640-1|BAC05130.1| 411|Homo sapiens protein ( Homo sapiens
cDNA FLJ40321 fis, clone TESTI2030860. ).
Length = 411
Score = 30.7 bits (66), Expect = 9.4
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Frame = -3
Query: 477 GXLPPPLXSXGPVX-----ESGXPRXGXSXXGGPIFGPGXVRGPQTLXG-SXXLPPXXXH 316
G +P P+ GP+ + P G GPI PG +R P +L G + L P
Sbjct: 253 GPIPGPISGPGPIIGPIPSPAQIPGPGRLQGPGPILSPGRMRSPGSLPGLALILGPGSGP 312
Query: 315 XSG 307
SG
Sbjct: 313 GSG 315
>AC066694-1|AAY24164.1| 1466|Homo sapiens unknown protein.
Length = 1466
Score = 30.7 bits (66), Expect = 9.4
Identities = 23/62 (37%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Frame = -3
Query: 507 PXXXXAXGXRGXL--PPPLXSXGPVXESGXP-RXGXSXXGGPIFGPGXVRGPQTLXGSXX 337
P G +G + P P GPV SG P + G S GPI GP RG + GS
Sbjct: 1118 PGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPI-GPPGPRGNRGERGSEG 1176
Query: 336 LP 331
P
Sbjct: 1177 SP 1178
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,515,864
Number of Sequences: 237096
Number of extensions: 1634029
Number of successful extensions: 2764
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2698
length of database: 76,859,062
effective HSP length: 91
effective length of database: 55,283,326
effective search space used: 14539514738
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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