Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_E13
         (1064 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82083-5|CAB04973.1|  298|Caenorhabditis elegans Hypothetical pr...    30   2.4  
AF000198-8|AAP68908.1|  435|Caenorhabditis elegans Collagen prot...    29   7.4  

>Z82083-5|CAB04973.1|  298|Caenorhabditis elegans Hypothetical
           protein ZK1010.7 protein.
          Length = 298

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 15/31 (48%), Positives = 16/31 (51%)
 Frame = +1

Query: 355 GLGPPDXPXXKNGSPXXRXXXSGXPAFXXRP 447
           GL  PD P  KNG+P  R    G P F  RP
Sbjct: 103 GLPGPDGPPGKNGAP-GRPGAPGAPGFPGRP 132


>AF000198-8|AAP68908.1|  435|Caenorhabditis elegans Collagen protein
           51 protein.
          Length = 435

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 21/81 (25%), Positives = 21/81 (25%)
 Frame = +3

Query: 267 DRPXXSXPHXGXPAPTXGXXXXXAXXNPXGSGAPGXAXXQKWVPPXATXRIGXXRFXXPA 446
           D    S P  G P P            P   G PG         P      G      P 
Sbjct: 204 DGDAGSPPPPGPPGPPGPPGNDGQPGAPGQDGQPGAPGTNTVNSPGGPGPAGPPGPPGPP 263

Query: 447 RXMXGGGAXXPXPPSPXXXRG 509
                GGA  P PP P    G
Sbjct: 264 GQDGSGGAAQPGPPGPPGPPG 284


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,059,062
Number of Sequences: 27780
Number of extensions: 198214
Number of successful extensions: 363
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 361
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2845728736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)