Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_E12
         (900 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1795.03 |gms1||UDP-galactose transporter Gms1|Schizosaccharo...    32   0.13 
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos...    28   1.6  
SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|ch...    28   1.6  
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc...    28   2.1  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    27   3.6  
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    27   4.8  
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei...    26   6.3  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    26   8.4  
SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|...    26   8.4  

>SPCC1795.03 |gms1||UDP-galactose transporter
           Gms1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 353

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = +2

Query: 317 YCLEIILTS-FLIYGAHKRIISYMKWFYYFTVTTTVAAILIQILEFTSYRSFGFIIEVCL 493
           Y L+I+ T+ F I   H+R+   MKWF  F +T  +A + +Q L      S G +  V  
Sbjct: 128 YQLKILTTAIFSILLLHRRL-GPMKWFSLFLLTGGIAIVQLQNLNSDDQMSAGPMNPVTG 186

Query: 494 FSA 502
           FSA
Sbjct: 187 FSA 189


>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 785

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 15/57 (26%), Positives = 30/57 (52%)
 Frame = +2

Query: 176 LVFGYINLFFSAFLVGLHSYGVHYQKNVFSVYHGITTGVPTELSIALYCLEIILTSF 346
           L +  I LFF+ +L  +  +   +QK  F++   + TG    + I  +CL++ + +F
Sbjct: 694 LAWSGIGLFFNYYLKKI--FADWWQKYNFTLSAALDTGTQLSVIILFFCLQLPMVNF 748


>SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 12/40 (30%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = -3

Query: 616 SGDD-LMKRIVVEMRAIHFEFLDETPHMKDQVYLYEQSAG 500
           SG++ L+K++++E+   +++F+DE    K+    YE + G
Sbjct: 628 SGENKLIKKLIIEINQKNYDFIDEFFKTKEITLSYEDALG 667


>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 503

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = -3

Query: 607 DLMKRIVVEMRAIHFEFLDETPHMKDQVYLYEQS 506
           DLMKR  ++ R I    LDE  +M DQ  L +QS
Sbjct: 243 DLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQS 276


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 4924

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = -1

Query: 231 LCKPTRKALKNRLIYPNTNTPFLRGMQKQHLPNSGRSQYIVTVFSI 94
           L KP     KN  +  N  TP  +GM  +   N+G   +  TVF I
Sbjct: 789 LLKPNEVQSKNNFL--NKCTPLQKGMLYESFSNNGNLYFNHTVFKI 832


>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 463 FVWIYHRSVPFQRQRTVHTNILDPSCEESHQ 555
           +VW +H S  F R  T  TN+    C  SH+
Sbjct: 579 WVWGFHASNFFLRDETNETNVFFIDCGGSHR 609


>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 586

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/47 (23%), Positives = 24/47 (51%)
 Frame = -1

Query: 792 RTSYMNPVHVTEDTKSKLEIKIKMTIAKLINNLKINKTYTVFGSTVV 652
           R  +  PVH     K ++ +  K+ ++++I      K+ T+FG  ++
Sbjct: 132 RQRHYVPVHCKRMPKKEITLNQKLYVSQVIGPADAPKSKTIFGKRIM 178


>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -1

Query: 531 IKYICMNSPLALKRHTSMINPNERYDVNSSICMSI 427
           IKY+ ++SP+  KR +    P    D++S+I  S+
Sbjct: 336 IKYVLLDSPIFRKRTSHDPYPPRMDDISSAIFYSV 370


>SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 552

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = +2

Query: 182 FGYINLFFSAFLVGLHSYGVHYQKNVFS---VYHGITTGVPTELSIALY 319
           F YI+ +      G  +YGV Y KN  S   ++  I  G+   L+I L+
Sbjct: 217 FFYISCYGCNIPAGFIAYGVQYAKNTISPWKLFMIIVGGITFFLTIGLF 265


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,390,544
Number of Sequences: 5004
Number of extensions: 68527
Number of successful extensions: 193
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)