Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_E12
         (900 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z32682-7|CAA83615.1|  170|Caenorhabditis elegans Hypothetical pr...    31   1.5  
Z48045-11|CAM33500.1|  887|Caenorhabditis elegans Hypothetical p...    30   2.6  
Z48045-10|CAA88101.2|  849|Caenorhabditis elegans Hypothetical p...    30   2.6  
Z32679-7|CAD90169.1|  177|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z68220-5|CAA92490.2|  282|Caenorhabditis elegans Hypothetical pr...    29   6.0  
U64855-2|AAB04981.2| 1080|Caenorhabditis elegans Importin beta f...    28   7.9  
AF016449-9|AAG23993.2|  351|Caenorhabditis elegans Serpentine re...    28   7.9  

>Z32682-7|CAA83615.1|  170|Caenorhabditis elegans Hypothetical
           protein M04D8.7 protein.
          Length = 170

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +2

Query: 329 IILTSFLIYGAHKRIISYMKWFYYFTVTTTVAAIL 433
           +    FLI+   KR + ++KW    T+T T+ +++
Sbjct: 44  LFFNGFLIFAVAKRDVKHLKWAQRLTMTATILSVI 78


>Z48045-11|CAM33500.1|  887|Caenorhabditis elegans Hypothetical
           protein C41C4.5b protein.
          Length = 887

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +2

Query: 386 KWFYYFTVTTTVAAILIQILEFTS-YRSFGFIIEVCL 493
           +WF+Y   T  + A+LIQI    S YR +G  +++ L
Sbjct: 92  RWFWYTAFTICLLALLIQIFFLISKYRQYGKTVDLDL 128


>Z48045-10|CAA88101.2|  849|Caenorhabditis elegans Hypothetical
           protein C41C4.5a protein.
          Length = 849

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +2

Query: 386 KWFYYFTVTTTVAAILIQILEFTS-YRSFGFIIEVCL 493
           +WF+Y   T  + A+LIQI    S YR +G  +++ L
Sbjct: 54  RWFWYTAFTICLLALLIQIFFLISKYRQYGKTVDLDL 90


>Z32679-7|CAD90169.1|  177|Caenorhabditis elegans Hypothetical
           protein C05B5.8 protein.
          Length = 177

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = +2

Query: 317 YCLEIILTSFLIYGAHKRIISYMKWFYYFTVTTTVAAILIQILEFTSY 460
           +C+ ++L   L++GA+K  +  +KW    +   T A +LI I+ F  Y
Sbjct: 49  FCV-LLLDLLLLFGAYKNDVFALKW----SQRVTFACVLIAIIRFMIY 91


>Z68220-5|CAA92490.2|  282|Caenorhabditis elegans Hypothetical
           protein T20D3.8 protein.
          Length = 282

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 11/35 (31%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = +2

Query: 224 LHSYGVHYQKNVFSVYHGITTGVPTELSI-ALYCL 325
           LH+YG  ++  +F VY  +++ +   LS+ ++YC+
Sbjct: 198 LHAYGAEFRNRIFHVYPCLSSTIFCFLSLFSIYCI 232


>U64855-2|AAB04981.2| 1080|Caenorhabditis elegans Importin beta family
            protein 4,isoform a protein.
          Length = 1080

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 14/59 (23%), Positives = 26/59 (44%)
 Frame = -3

Query: 553  DETPHMKDQVYLYEQSAGAEKAHFDDKSKRTIRCEFQYLYEYRRNSCRHREIVEPFHVR 377
            D  P   +  Y+YE   G  +AHFD+ ++  IR   +  + +       R  +  F ++
Sbjct: 976  DANPSQPNIDYIYEHIGGNFQAHFDNMNQDQIRIIIKGFFSFNTEISSMRNHLRDFLIQ 1034


>AF016449-9|AAG23993.2|  351|Caenorhabditis elegans Serpentine
           receptor, class t protein9 protein.
          Length = 351

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
 Frame = +2

Query: 248 QKNVFSVYHGITTGVPTELSIALYCLEIILTSFLIYGAHKRIISYMKWFYYFTVTTTVAA 427
           Q  +  V+H +  G+   +    Y   +I+ S +I+G      S      Y T   T+  
Sbjct: 241 QSIILCVFHAVAAGIYLFMRFIYYTPTLIILSHIIWGWS----SGCMCIAYLTFNRTIRN 296

Query: 428 ILIQILEFTSYR-SFGFIIE 484
           ++I+I+   S+R S+G  ++
Sbjct: 297 LVIKIIIPKSFRMSYGLHVD 316


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,636,866
Number of Sequences: 27780
Number of extensions: 380591
Number of successful extensions: 1045
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1045
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)