Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_E11
         (880 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    31   0.22 
SPBC19F5.01c |puc1|SPBP8B7.32c|cyclin Puc1|Schizosaccharomyces p...    30   0.50 
SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun...    27   4.7  
SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||...    26   6.1  
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    26   6.1  
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi...    26   8.1  
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa...    26   8.1  

>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1220

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
 Frame = +2

Query: 212 LQDGRLSGYSSTVQRDSGLDSGLRNHWADVLRAVSYAGT--YTSRAALAGSASCRSSEVL 385
           L DG +  Y+ T + D+G D  +    A+ +    Y+G+  +T+    A   +  + EV+
Sbjct: 82  LTDGSIDTYTITAKTDTGTDVVVVETSANTITTTLYSGSLEFTTTLDSANGTTPATIEVV 141

Query: 386 L*PS*TCNMVTYSVTTP*FKST 451
              + T     YS TTP F +T
Sbjct: 142 EPAAGTVTTTIYSGTTP-FNTT 162


>SPBC19F5.01c |puc1|SPBP8B7.32c|cyclin Puc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 359

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
 Frame = -3

Query: 335 LYMSQHMKLPGEHLPNGYEGRYRA---HYLFVRLKNIR*GVHLGGSLCFIYWCLK 180
           LY +Q   L G  + NGY G Y+    H+L  R KN    VHL      + W ++
Sbjct: 76  LYNTQSSLLTGLSM-NGYLGEYQEDIIHHLITREKNFLLNVHLSNQQPELRWSMR 129


>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
           Alg2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 511

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -1

Query: 256 SLYG*RISAKASILEDLYVLFIGVLNYIHYD 164
           S++G R+S   S L  +Y+  I + NY+H+D
Sbjct: 82  SIFG-RLSIFCSSLRQVYLTMILLTNYMHFD 111


>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -2

Query: 396 DGHNNTSEERHDADPASAALLVYVPAY 316
           DG N T+   HD D  +  LLVY P Y
Sbjct: 513 DGKNTTAGN-HDVDNNTPPLLVYFPNY 538


>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 673

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -2

Query: 396 DGHNNTSEERHDADPASAALLVYVPAY 316
           DG N T+   HD D  +  LLVY P Y
Sbjct: 513 DGKNTTAGN-HDVDNNTPPLLVYFPNY 538


>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
           Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/55 (21%), Positives = 26/55 (47%)
 Frame = -2

Query: 537 TDLSPNLDLLLGVIEVYHHVDDI*GQTEHVDLNHGVVTEYVTILQVQDGHNNTSE 373
           T L+    +L     ++   DD+    E++D    +++ +  I  V+D H+ T +
Sbjct: 467 TILNSRTSVLAAANPIFGRYDDMKTPGENIDFQSTILSRFDMIFIVKDEHDETKD 521


>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
           Msa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = -3

Query: 383 TPPRNGMMPIP 351
           +PPRN MMPIP
Sbjct: 466 SPPRNAMMPIP 476


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,184,055
Number of Sequences: 5004
Number of extensions: 64348
Number of successful extensions: 146
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)