Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_E11
(880 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC005943-1|AAH05943.1| 221|Homo sapiens recombination activatin... 73 2e-12
AL691442-8|CAI15323.1| 221|Homo sapiens recombination activatin... 73 2e-12
AF126023-1|AAF17232.1| 221|Homo sapiens stromal cell protein pr... 73 2e-12
CR457148-1|CAG33429.1| 221|Homo sapiens LOC55974 protein. 70 1e-11
AL691442-9|CAI15324.1| 166|Homo sapiens recombination activatin... 44 0.001
AL691442-6|CAI15321.1| 156|Homo sapiens recombination activatin... 44 0.001
AF126024-1|AAF17233.1| 179|Homo sapiens stromal cell protein is... 44 0.001
BC009621-1|AAH09621.1| 167|Homo sapiens RAG1AP1 protein protein. 42 0.003
AL691442-7|CAI15322.1| 167|Homo sapiens recombination activatin... 42 0.003
BC036522-1|AAH36522.1| 780|Homo sapiens cation channel, sperm a... 35 0.34
BC032950-1|AAH32950.1| 780|Homo sapiens cation channel, sperm a... 35 0.34
AF407333-1|AAL14105.1| 780|Homo sapiens sperm ion channel protein. 35 0.34
>BC005943-1|AAH05943.1| 221|Homo sapiens recombination activating
gene 1 activating protein 1 protein.
Length = 221
Score = 72.5 bits (170), Expect = 2e-12
Identities = 44/154 (28%), Positives = 75/154 (48%), Gaps = 4/154 (2%)
Frame = +1
Query: 343 STRGIGIMPFLGGVVMTILNLQYGYILRDDTMIQVNMFGLALNIIYVMIYFNYSQQKVKV 522
S + +PFL V + L YG + D +I VN G AL +Y++ Y +Y +K V
Sbjct: 38 SVDNVQFLPFLTTEVNNLGWLSYGALKGDGILIVVNTVGAALQTLYILAYLHYCPRKRVV 97
Query: 523 WAQIGLAGAVSAALIGYAQ----TEDPKLVETRFGTIITAFMFYLIASPLFGLKEIIQNK 690
Q A + L+GY +P+ + G + F + SPL L ++IQ K
Sbjct: 98 LLQT--ATLLGVLLLGYGYFWLLVPNPEARLQQLGLFCSVFTISMYLSPLADLAKVIQTK 155
Query: 691 STEGMPFXIILSGTVVTFMWLLYGIILRNKFLVV 792
ST+ + + + ++ + + W LYG LR+ +++V
Sbjct: 156 STQCLSYPLTIATLLTSASWCLYGFRLRDPYIMV 189
>AL691442-8|CAI15323.1| 221|Homo sapiens recombination activating
gene 1 activating protein 1 protein.
Length = 221
Score = 72.5 bits (170), Expect = 2e-12
Identities = 44/154 (28%), Positives = 75/154 (48%), Gaps = 4/154 (2%)
Frame = +1
Query: 343 STRGIGIMPFLGGVVMTILNLQYGYILRDDTMIQVNMFGLALNIIYVMIYFNYSQQKVKV 522
S + +PFL V + L YG + D +I VN G AL +Y++ Y +Y +K V
Sbjct: 38 SVDNVQFLPFLTTEVNNLGWLSYGALKGDGILIVVNTVGAALQTLYILAYLHYCPRKRVV 97
Query: 523 WAQIGLAGAVSAALIGYAQ----TEDPKLVETRFGTIITAFMFYLIASPLFGLKEIIQNK 690
Q A + L+GY +P+ + G + F + SPL L ++IQ K
Sbjct: 98 LLQT--ATLLGVLLLGYGYFWLLVPNPEARLQQLGLFCSVFTISMYLSPLADLAKVIQTK 155
Query: 691 STEGMPFXIILSGTVVTFMWLLYGIILRNKFLVV 792
ST+ + + + ++ + + W LYG LR+ +++V
Sbjct: 156 STQCLSYPLTIATLLTSASWCLYGFRLRDPYIMV 189
>AF126023-1|AAF17232.1| 221|Homo sapiens stromal cell protein
protein.
Length = 221
Score = 72.5 bits (170), Expect = 2e-12
Identities = 44/154 (28%), Positives = 75/154 (48%), Gaps = 4/154 (2%)
Frame = +1
Query: 343 STRGIGIMPFLGGVVMTILNLQYGYILRDDTMIQVNMFGLALNIIYVMIYFNYSQQKVKV 522
S + +PFL V + L YG + D +I VN G AL +Y++ Y +Y +K V
Sbjct: 38 SVDNVRFLPFLTTEVNNLGWLSYGALKGDGILIVVNTVGAALQTLYILAYLHYCPRKRVV 97
Query: 523 WAQIGLAGAVSAALIGYAQ----TEDPKLVETRFGTIITAFMFYLIASPLFGLKEIIQNK 690
Q A + L+GY +P+ + G + F + SPL L ++IQ K
Sbjct: 98 LLQT--ATLLGVLLLGYGYFWLLVPNPEARLQQLGLFCSVFTISMYLSPLADLAKVIQTK 155
Query: 691 STEGMPFXIILSGTVVTFMWLLYGIILRNKFLVV 792
ST+ + + + ++ + + W LYG LR+ +++V
Sbjct: 156 STQCLSYPLTIATLLTSASWCLYGFRLRDPYIMV 189
>CR457148-1|CAG33429.1| 221|Homo sapiens LOC55974 protein.
Length = 221
Score = 70.1 bits (164), Expect = 1e-11
Identities = 43/154 (27%), Positives = 74/154 (48%), Gaps = 4/154 (2%)
Frame = +1
Query: 343 STRGIGIMPFLGGVVMTILNLQYGYILRDDTMIQVNMFGLALNIIYVMIYFNYSQQKVKV 522
S + +PFL V + L YG + D +I VN G AL +Y++ Y +Y +K V
Sbjct: 38 SVDNVQFLPFLTTEVNNLGWLSYGALKGDGILIVVNTVGAALQTLYILAYLHYCPRKRVV 97
Query: 523 WAQIGLAGAVSAALIGYAQ----TEDPKLVETRFGTIITAFMFYLIASPLFGLKEIIQNK 690
Q A + L+GY +P+ + + F + SPL L ++IQ K
Sbjct: 98 LLQT--ATLLGVLLLGYGYFWLLVPNPEARLQQLALFCSVFTISMYLSPLADLAKVIQTK 155
Query: 691 STEGMPFXIILSGTVVTFMWLLYGIILRNKFLVV 792
ST+ + + + ++ + + W LYG LR+ +++V
Sbjct: 156 STQCLSYPLTIATLLTSASWCLYGFRLRDPYIMV 189
>AL691442-9|CAI15324.1| 166|Homo sapiens recombination activating
gene 1 activating protein 1 protein.
Length = 166
Score = 43.6 bits (98), Expect = 0.001
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Frame = +1
Query: 541 AGAVSAALIGYAQ----TEDPKLVETRFGTIITAFMFYLIASPLFGLKEIIQNKSTEGMP 708
A + L+GY +P+ + G + F + SPL L ++IQ KST+ +
Sbjct: 47 ATLLGVLLLGYGYFWLLVPNPEARLQQLGLFCSVFTISMYLSPLADLAKVIQTKSTQCLS 106
Query: 709 FXIILSGTVVTFMWLLYGIILRNKFLVV 792
+ + ++ + + W LYG LR+ +++V
Sbjct: 107 YPLTIATLLTSASWCLYGFRLRDPYIMV 134
>AL691442-6|CAI15321.1| 156|Homo sapiens recombination activating
gene 1 activating protein 1 protein.
Length = 156
Score = 43.6 bits (98), Expect = 0.001
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Frame = +1
Query: 541 AGAVSAALIGYAQ----TEDPKLVETRFGTIITAFMFYLIASPLFGLKEIIQNKSTEGMP 708
A + L+GY +P+ + G + F + SPL L ++IQ KST+ +
Sbjct: 37 ATLLGVLLLGYGYFWLLVPNPEARLQQLGLFCSVFTISMYLSPLADLAKVIQTKSTQCLS 96
Query: 709 FXIILSGTVVTFMWLLYGIILRNKFLVV 792
+ + ++ + + W LYG LR+ +++V
Sbjct: 97 YPLTIATLLTSASWCLYGFRLRDPYIMV 124
>AF126024-1|AAF17233.1| 179|Homo sapiens stromal cell protein
isoform protein.
Length = 179
Score = 43.6 bits (98), Expect = 0.001
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Frame = +1
Query: 541 AGAVSAALIGYAQ----TEDPKLVETRFGTIITAFMFYLIASPLFGLKEIIQNKSTEGMP 708
A + L+GY +P+ + G + F + SPL L ++IQ KST+ +
Sbjct: 60 ATLLGVLLLGYGYFWLLVPNPEARLQQLGLFCSVFTISMYLSPLADLAKVIQTKSTQCLS 119
Query: 709 FXIILSGTVVTFMWLLYGIILRNKFLVV 792
+ + ++ + + W LYG LR+ +++V
Sbjct: 120 YPLTIATLLTSASWCLYGFRLRDPYIMV 147
>BC009621-1|AAH09621.1| 167|Homo sapiens RAG1AP1 protein protein.
Length = 167
Score = 41.9 bits (94), Expect = 0.003
Identities = 21/60 (35%), Positives = 31/60 (51%)
Frame = +1
Query: 343 STRGIGIMPFLGGVVMTILNLQYGYILRDDTMIQVNMFGLALNIIYVMIYFNYSQQKVKV 522
S + +PFL V + L YG + D +I VN G AL +Y++ Y +Y +K KV
Sbjct: 38 SVDNVQFLPFLTTEVNNLGWLSYGALKGDGILIVVNTVGAALQTLYILAYLHYCPRKAKV 97
Score = 33.1 bits (72), Expect = 1.4
Identities = 12/40 (30%), Positives = 26/40 (65%)
Frame = +1
Query: 673 EIIQNKSTEGMPFXIILSGTVVTFMWLLYGIILRNKFLVV 792
++IQ KST+ + + + ++ + + W LYG LR+ +++V
Sbjct: 96 KVIQTKSTQCLSYPLTIATLLTSASWCLYGFRLRDPYIMV 135
>AL691442-7|CAI15322.1| 167|Homo sapiens recombination activating
gene 1 activating protein 1 protein.
Length = 167
Score = 41.9 bits (94), Expect = 0.003
Identities = 21/60 (35%), Positives = 31/60 (51%)
Frame = +1
Query: 343 STRGIGIMPFLGGVVMTILNLQYGYILRDDTMIQVNMFGLALNIIYVMIYFNYSQQKVKV 522
S + +PFL V + L YG + D +I VN G AL +Y++ Y +Y +K KV
Sbjct: 38 SVDNVQFLPFLTTEVNNLGWLSYGALKGDGILIVVNTVGAALQTLYILAYLHYCPRKAKV 97
Score = 33.1 bits (72), Expect = 1.4
Identities = 12/40 (30%), Positives = 26/40 (65%)
Frame = +1
Query: 673 EIIQNKSTEGMPFXIILSGTVVTFMWLLYGIILRNKFLVV 792
++IQ KST+ + + + ++ + + W LYG LR+ +++V
Sbjct: 96 KVIQTKSTQCLSYPLTIATLLTSASWCLYGFRLRDPYIMV 135
>BC036522-1|AAH36522.1| 780|Homo sapiens cation channel, sperm
associated 1 protein.
Length = 780
Score = 35.1 bits (77), Expect = 0.34
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +3
Query: 300 FSGQFHM--LGHIQAGQHSRDRHHAVPRRCCYDHPELAIWLHTP*RHHDSSQHVRS 461
+S FH H+ QH +HH VP R H + + H RHH++ QH +S
Sbjct: 187 YSESFHHSEASHLSGLQHDESQHHQVPHRGWPHHHQ--VHHHGRSRHHEAHQHGKS 240
>BC032950-1|AAH32950.1| 780|Homo sapiens cation channel, sperm
associated 1 protein.
Length = 780
Score = 35.1 bits (77), Expect = 0.34
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +3
Query: 300 FSGQFHM--LGHIQAGQHSRDRHHAVPRRCCYDHPELAIWLHTP*RHHDSSQHVRS 461
+S FH H+ QH +HH VP R H + + H RHH++ QH +S
Sbjct: 187 YSESFHHSEASHLSGLQHDESQHHQVPHRGWPHHHQ--VHHHGRSRHHEAHQHGKS 240
>AF407333-1|AAL14105.1| 780|Homo sapiens sperm ion channel protein.
Length = 780
Score = 35.1 bits (77), Expect = 0.34
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +3
Query: 300 FSGQFHM--LGHIQAGQHSRDRHHAVPRRCCYDHPELAIWLHTP*RHHDSSQHVRS 461
+S FH H+ QH +HH VP R H + + H RHH++ QH +S
Sbjct: 187 YSESFHHSEASHLSGLQHDESQHHQVPHRGWPHHHQ--VHHHGRSRHHEAHQHGKS 240
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,918,572
Number of Sequences: 237096
Number of extensions: 2545269
Number of successful extensions: 6052
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6045
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11215125244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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