Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_E10
         (894 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1329 + 36354340-36354493,36355781-36355942,36356279-363564...    30   2.9  
11_06_0640 + 25744048-25745021,25745128-25745273,25747870-257479...    28   8.7  
03_04_0222 + 18858255-18858437,18858586-18858772,18858820-18859097     28   8.7  

>01_06_1329 +
           36354340-36354493,36355781-36355942,36356279-36356457,
           36356719-36356918,36356938-36357014,36357110-36357111,
           36357594-36357701,36357806-36358024,36358167-36358448
          Length = 460

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -1

Query: 150 ITLTEQLCRYVINSVPSESAPRLPPFARATHYIMIKI 40
           IT T  + R ++     E + R+P  AR TH+I+I+I
Sbjct: 388 ITRTRTINRCMLQGGKQEVSTRIPSVARRTHHIVIQI 424


>11_06_0640 +
           25744048-25745021,25745128-25745273,25747870-25747945,
           25747996-25748230
          Length = 476

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +1

Query: 217 YLIASTLLITRHILRTDALYRRDGRI-TFIVQFTV 318
           YL  +T L+TRH+LR   L   DGR   F+V F++
Sbjct: 243 YLFFATTLVTRHLLRGALL--GDGRFYVFLVVFSI 275


>03_04_0222 + 18858255-18858437,18858586-18858772,18858820-18859097
          Length = 215

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 586 PTERWSQ*SHPTTVKQRRILSETDRATP 669
           P + WS+ ++   +K RR+  + D+ATP
Sbjct: 50  PQQIWSRPANSLPIKARRLFQDDDKATP 77


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,645,434
Number of Sequences: 37544
Number of extensions: 406164
Number of successful extensions: 896
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)