Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_E10
         (894 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70852-3|AAK29822.1|  836|Caenorhabditis elegans Hypothetical pr...    29   3.4  
U70852-2|AAK29821.1| 1231|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AC024807-3|AAK84614.1|  252|Caenorhabditis elegans Hypothetical ...    29   4.5  
AF038614-9|AAB92062.2|  445|Caenorhabditis elegans Hypothetical ...    29   5.9  
Z75955-15|CAB00117.2|  484|Caenorhabditis elegans Hypothetical p...    28   7.8  
AF025467-8|ABR92604.1|  443|Caenorhabditis elegans X-box promote...    28   7.8  
AF025467-7|AAB71036.2|  485|Caenorhabditis elegans X-box promote...    28   7.8  

>U70852-3|AAK29822.1|  836|Caenorhabditis elegans Hypothetical
           protein F45E4.3b protein.
          Length = 836

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = +1

Query: 568 PRRLCHPTERWSQ*SHPTTVK--QRRILSETDRATPV 672
           PRR  HPT   S  SHP+T K   + I  + D   PV
Sbjct: 281 PRRYHHPTSVASHQSHPSTFKHMSKSIACQADELPPV 317


>U70852-2|AAK29821.1| 1231|Caenorhabditis elegans Hypothetical
           protein F45E4.3a protein.
          Length = 1231

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = +1

Query: 568 PRRLCHPTERWSQ*SHPTTVK--QRRILSETDRATPV 672
           PRR  HPT   S  SHP+T K   + I  + D   PV
Sbjct: 281 PRRYHHPTSVASHQSHPSTFKHMSKSIACQADELPPV 317


>AC024807-3|AAK84614.1|  252|Caenorhabditis elegans Hypothetical
           protein Y53G8AL.3 protein.
          Length = 252

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 150 YLLNCFD*KDKEITKVPSRTTPVSYRIHSIDHS 248
           + L+C D      T+VP+ TTPVS    S  H+
Sbjct: 25  FQLSCLDTTSSSTTEVPATTTPVSLEFVSSAHT 57


>AF038614-9|AAB92062.2|  445|Caenorhabditis elegans Hypothetical
           protein F15E6.2 protein.
          Length = 445

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +1

Query: 523 KCSTNQTWITYHCRRPRRLCHPTER-WSQ*SHPTTVKQRRILSET 654
           +C+TN  W+  +CR+    C   +R W   +H  T  Q    ++T
Sbjct: 39  ECATNAVWMMANCRKSCHSCQGGDRAWKLRTHIQTTYQNATDNKT 83


>Z75955-15|CAB00117.2|  484|Caenorhabditis elegans Hypothetical
           protein R07B7.9a protein.
          Length = 484

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +3

Query: 675 RESKTDERTY-DFRPRKYSDNFTSELNQSDDVDYRHSMTER 794
           R ++ +  TY D +  KY D    E+  SD +D++++  E+
Sbjct: 86  RGNEENSGTYNDLKSSKYEDTTVEEIQTSDGIDFQNAEKEK 126


>AF025467-8|ABR92604.1|  443|Caenorhabditis elegans X-box promoter
           element regulatedprotein 7, isoform b protein.
          Length = 443

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 17/72 (23%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
 Frame = +3

Query: 654 GPGYSSMRESKTDERTYDFRPRKYSDNFTSELNQSDDVDY---RHSMTERTXRLXKNAGR 824
           G GY S+   K+  + + +RP  ++  +   + Q+ D+DY     S  ER  R  + +G 
Sbjct: 315 GSGYVSLTPGKSLSKIHLWRPISHNSLYEMFVGQAIDIDYFGTPKSSLERVGRDGQPSGI 374

Query: 825 ILCRLIYMSQAQ 860
           ++ +   ++Q++
Sbjct: 375 VIMKTDCVAQSR 386


>AF025467-7|AAB71036.2|  485|Caenorhabditis elegans X-box promoter
           element regulatedprotein 7, isoform a protein.
          Length = 485

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 17/72 (23%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
 Frame = +3

Query: 654 GPGYSSMRESKTDERTYDFRPRKYSDNFTSELNQSDDVDY---RHSMTERTXRLXKNAGR 824
           G GY S+   K+  + + +RP  ++  +   + Q+ D+DY     S  ER  R  + +G 
Sbjct: 315 GSGYVSLTPGKSLSKIHLWRPISHNSLYEMFVGQAIDIDYFGTPKSSLERVGRDGQPSGI 374

Query: 825 ILCRLIYMSQAQ 860
           ++ +   ++Q++
Sbjct: 375 VIMKTDCVAQSR 386


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,812,067
Number of Sequences: 27780
Number of extensions: 371094
Number of successful extensions: 863
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)