Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_E10
         (894 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   3.8  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   5.0  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   5.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   5.0  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    22   6.6  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           22   6.6  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   8.7  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   8.7  

>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 7/24 (29%), Positives = 16/24 (66%)
 Frame = -3

Query: 217 TGVVRLGTLVISLSFQSKQLSKYN 146
           TG+  + T +++ ++ SK + +YN
Sbjct: 192 TGMNNIETYIVNTNYSSKNMREYN 215


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 7/24 (29%), Positives = 16/24 (66%)
 Frame = -3

Query: 217 TGVVRLGTLVISLSFQSKQLSKYN 146
           TG+  + T +++ ++ SK + +YN
Sbjct: 192 TGMNNIETYIVNTNYSSKYMREYN 215


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 396 LTGKLKIIVFCGFNQIIMAAKSPTVSLKFREVIGVE 503
           L G   ++   G+   I    S T+S KFR++I +E
Sbjct: 534 LCGLSSMLCIPGYMIYIWFTTSGTISEKFRKLIRIE 569


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 396 LTGKLKIIVFCGFNQIIMAAKSPTVSLKFREVIGVE 503
           L G   ++   G+   I    S T+S KFR++I +E
Sbjct: 587 LCGLSSMLCIPGYMIYIWFTTSGTISEKFRKLIRIE 622


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
 Frame = -1

Query: 123 YVINSVPSESA---PRLPPFARATHYIMI 46
           +V N VP+ ++   PRL P  ++ HY+ I
Sbjct: 499 FVNNGVPNVNSVQWPRLNPNEKSLHYLHI 527


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
 Frame = -1

Query: 123 YVINSVPSESA---PRLPPFARATHYIMI 46
           +V N VP+ ++   PRL P  ++ HY+ I
Sbjct: 499 FVNNGVPNVNSVQWPRLNPNEKSLHYLHI 527


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +3

Query: 711  RPRKYSDNFTSELNQSDDVDYRHSMTERTXRLXKNAGR 824
            RP   S+N+T ++   +  D + +   R   + + AGR
Sbjct: 1146 RPDTDSENWTPKMMAVEPTDKQANSKTRRQEMMREAGR 1183


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -1

Query: 390  YFYFCTIHIMTSPVSLRL*HRTRVHGKLDNK 298
            +FY C    M   V   L H  + HG++ +K
Sbjct: 1068 HFYVCGDCTMAEDVYQTLKHIIQTHGEMTDK 1098


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,190
Number of Sequences: 438
Number of extensions: 4319
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)