Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_E09
         (878 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S...    28   1.5  
SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch...    28   2.0  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    27   4.7  
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1...    26   6.1  
SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit Ssr4|Schizos...    26   8.1  
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar...    26   8.1  

>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 387 VSRDIRTTTEARRPGTARNTRRPK 316
           V+R +RT+T  RRP T    R+PK
Sbjct: 21  VARKVRTSTTFRRPKTLELARKPK 44


>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = -3

Query: 387 VSRDIRTTTEARRPGTARNTRRPK 316
           V++ +RT+T  RRP T + +R+PK
Sbjct: 21  VAKKVRTSTTFRRPKTLQLSRKPK 44


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 360 EARRPGTARNTRRPKPTELSARCRERSETPRHRN 259
           EA  PG  RNTR+    ++S     ++ET   +N
Sbjct: 475 EADYPGVNRNTRQDDVQDISMETESQNETDESQN 508


>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
           complex subunit Tpr1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1039

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +3

Query: 27  RESLRFLIRCYDFVLQRN 80
           +ESL    RC+DFVLQ++
Sbjct: 154 KESLENAARCFDFVLQKS 171


>SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit
           Ssr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 345 GTARNTRRPKPTELSARCRERSETPRHRNKPSRPV 241
           GTA + R   P   SA+ + +S TP   N  + PV
Sbjct: 188 GTALSQRETLPNMGSAQMKSQSRTPSFSNVTTSPV 222


>SPBC4B4.04 |||translation initiation factor eIF2A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 576

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -1

Query: 395 AEP*AGTSGPPQRPGAQAQRETLGVRSRQS*ALAAGSAQR 276
           A+P    +G  + PGA+ Q  T   R  +   +++GSA +
Sbjct: 440 AKPSVKPAGAYRPPGARGQNSTFSYRREEIDVMSSGSANK 479


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,367,233
Number of Sequences: 5004
Number of extensions: 38446
Number of successful extensions: 109
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)