Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_E09
(878 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0665 - 18506221-18506271,18506331-18506401,18507097-185071... 31 0.92
11_04_0460 - 17955102-17955146,17955253-17955310,17955442-179555... 29 3.7
07_01_0566 + 4207894-4207974,4208090-4208144,4208671-4208759,420... 29 4.9
04_04_1641 + 34993807-34994589,34994924-34995022,34995521-349956... 29 4.9
04_03_0489 + 16503325-16503747,16503916-16503978 29 4.9
07_01_0547 + 4052618-4052659,4055575-4055741,4055839-4056556,405... 29 6.5
04_03_0771 + 19434460-19434987 29 6.5
12_02_1275 - 27482784-27483272 28 8.6
06_03_0685 - 23499779-23500204 28 8.6
02_05_1044 + 33728623-33728768,33728814-33728993,33729446-337295... 28 8.6
>04_03_0665 -
18506221-18506271,18506331-18506401,18507097-18507169,
18507476-18507805
Length = 174
Score = 31.5 bits (68), Expect = 0.92
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +2
Query: 212 WKWCGLRRDQTGREG 256
W WCGLRR + GR G
Sbjct: 65 WMWCGLRRSKAGRRG 79
>11_04_0460 -
17955102-17955146,17955253-17955310,17955442-17955593,
17955888-17955993,17956101-17956222,17956766-17956834,
17956969-17957214,17957331-17957373,17957449-17957520,
17957954-17958066,17958158-17958238,17958343-17958415,
17959413-17959519,17960410-17960514,17960684-17960974,
17961621-17961707,17961774-17961842,17961917-17961973,
17962057-17962155,17962223-17962312,17962395-17962511,
17964164-17964244,17964353-17964502,17964812-17964956,
17967359-17967510,17967647-17967784,17967838-17967914,
17968032-17968134
Length = 1015
Score = 29.5 bits (63), Expect = 3.7
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +3
Query: 186 SSSISKYYNGNGVDSVETKQVEKVYSGDGASLSAPGSERSALSASDAECFSLCLG 350
SSS S+Y N +G +T +++ SG +S S +S+ D E L LG
Sbjct: 781 SSSSSRYSNSSGTIFQKTSVQKRLSSGSSSSSKNKRSTAVVMSSPDCELDLLLLG 835
>07_01_0566 +
4207894-4207974,4208090-4208144,4208671-4208759,
4209742-4209794,4209966-4210120,4210201-4210528,
4210618-4210730,4211394-4211538,4211951-4212259,
4212340-4212420,4212989-4213349
Length = 589
Score = 29.1 bits (62), Expect = 4.9
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = -2
Query: 418 ARSPLRAVQSREQGHQDHHRGPAPRHSEKHSASEADRAE-RSLPGALRDAPSPE 260
+RSPLR RE+G +R P+PRHS S +E R + R+ + RD P+
Sbjct: 481 SRSPLRY---RERGG---YRRPSPRHSRSRSPAEHQRRDVRNRLRSGRDGGGPD 528
>04_04_1641 +
34993807-34994589,34994924-34995022,34995521-34995648,
34996095-34996235,34996456-34996542,34996627-34996780,
34998569-34998628,34999019-34999447,34999524-34999819,
35000278-35000407,35000690-35001187
Length = 934
Score = 29.1 bits (62), Expect = 4.9
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Frame = -3
Query: 366 TTEARRPGTARNTRRPKPTELSARCR-ERSETPRHRNK---PSRPVWSRRS 226
T E P T T P P E A R E RH+ K + P+W+R++
Sbjct: 84 TLEQPEPSTTTTTTTPPPPEPEAEAEARRQEEFRHKGKVFVGNLPLWARKA 134
>04_03_0489 + 16503325-16503747,16503916-16503978
Length = 161
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +1
Query: 289 PAASAQLCRLRTPSVSRCAWAPGLCGGPDVPAHGSA 396
PAA+A L RLRTP+ + C G P V H A
Sbjct: 49 PAAAACLRRLRTPATAACLRRAGNPRPPPVSPHKGA 84
>07_01_0547 +
4052618-4052659,4055575-4055741,4055839-4056556,
4056678-4057114,4057241-4057315,4057490-4057673,
4057759-4057854,4057952-4058018,4058556-4058715,
4058808-4059199,4059254-4059300
Length = 794
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/49 (28%), Positives = 20/49 (40%)
Frame = -2
Query: 409 PLRAVQSREQGHQDHHRGPAPRHSEKHSASEADRAERSLPGALRDAPSP 263
P R ++R + + P HS+K S +P LRD SP
Sbjct: 662 PPRPTKARSNSSRSSSKAPGAVHSQKFSKIANSGLNEEMPDILRDDASP 710
>04_03_0771 + 19434460-19434987
Length = 175
Score = 28.7 bits (61), Expect = 6.5
Identities = 18/56 (32%), Positives = 25/56 (44%)
Frame = -2
Query: 400 AVQSREQGHQDHHRGPAPRHSEKHSASEADRAERSLPGALRDAPSPE*TFSTCLVS 233
A +RE+ HHRG A + +H+ + RSLP P P ST V+
Sbjct: 76 ADSTREEAEHGHHRGRAGGEARRHTVV---LSRRSLPPESSPPPPPSPEPSTAAVA 128
>12_02_1275 - 27482784-27483272
Length = 162
Score = 28.3 bits (60), Expect = 8.6
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +2
Query: 209 QWKWCGLRRDQTGREG 256
+W W GLRR +TGR G
Sbjct: 144 RWVWRGLRRTKTGRRG 159
>06_03_0685 - 23499779-23500204
Length = 141
Score = 28.3 bits (60), Expect = 8.6
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +1
Query: 229 PSRPNRSRRFIPVTGRL*ALPAASAQLCRLRTPSVSRCAWAP 354
P R R RR+ P GR+ LP ++CR R P R P
Sbjct: 42 PPRGGRIRRWPPRRGRIRGLPPLGGRICR-RPPRGGRIHGLP 82
>02_05_1044 +
33728623-33728768,33728814-33728993,33729446-33729523,
33729834-33729930,33730206-33730339,33730944-33731025,
33731631-33731717,33731875-33731981,33732674-33732845,
33733018-33733259,33733482-33733563,33733954-33734019,
33734040-33734159,33734935-33735012,33735083-33735178,
33735791-33735897,33736031-33736199,33736402-33736452,
33736567-33736650,33736946-33737040,33737175-33737265,
33737342-33737488,33737614-33737676
Length = 857
Score = 28.3 bits (60), Expect = 8.6
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -3
Query: 546 LGHHGDXRRCWPKSWSLTIAGHLASRD 466
L D + WP W ++ AGH+++ D
Sbjct: 76 LQRRADCKDTWPGQWDISSAGHISAGD 102
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,705,419
Number of Sequences: 37544
Number of extensions: 331001
Number of successful extensions: 1182
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1180
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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