Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_E08
         (878 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   1.2  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    25   1.2  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    23   2.8  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    23   3.7  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    23   3.7  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    23   4.9  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    23   4.9  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    23   4.9  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 518  NCYIYNRLTSMCFFPYFFYLPVASSCN 438
            N YI +  +S  F+  F Y    SSCN
Sbjct: 946  NDYIVDESSSSSFYSSFLYKSSESSCN 972


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
 Frame = -2

Query: 751 DLNEMRFSKPAFSKVQISTACCETKENLVPSGENFI---SVGSNT 626
           DL E  + K    +   S  CC   +N+V  G  FI    +G NT
Sbjct: 181 DLMETSYFKVVVVEDVDSVECCGALKNIVACGAGFIDGLGLGDNT 225


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 116 IVILTMDEVVVGTYEGFLSWLLNP 187
           +++ T+  V+VG   GFL  L NP
Sbjct: 65  LLVFTIAAVLVGLILGFLGRLANP 88


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -2

Query: 199 DSTERIE*PR*KPFISTNNYLVHG*NYYRNSKYFYF 92
           D TER E  +    IS+NNY     N   NSK  Y+
Sbjct: 291 DRTER-ERSKETKIISSNNYNYKNYNNNYNSKKLYY 325


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -2

Query: 199 DSTERIE*PR*KPFISTNNYLVHG*NYYRNSKYFYF 92
           D TER E  +    IS+NNY     N   NSK  Y+
Sbjct: 302 DRTER-ERSKETKIISSNNYNYKNYNNNYNSKKLYY 336


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -2

Query: 199 DSTERIE*PR*KPFISTNNYLVHG*NYYRNSKY 101
           D TER      K   S +N  +H  N Y N+ Y
Sbjct: 69  DRTERERSREPKIISSLSNKTIHNNNNYNNNNY 101


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -2

Query: 199 DSTERIE*PR*KPFISTNNYLVHG*NYYRNSKY 101
           D TER      K   S +N  +H  N Y N+ Y
Sbjct: 69  DRTERERSREPKIISSLSNKTIHNNNNYNNNNY 101


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -2

Query: 199 DSTERIE*PR*KPFISTNNYLVHG*NYYRNSKY 101
           D TER      K   S +N  +H  N Y N+ Y
Sbjct: 302 DRTERERSREPKIISSLSNKTIHNNNNYNNNNY 334



 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +1

Query: 73  HMTKNLENKNIWNFYSNFNH 132
           H   N  N N  N Y+N+N+
Sbjct: 324 HNNNNYNNNNYNNNYNNYNN 343


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,071
Number of Sequences: 438
Number of extensions: 5376
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)