Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_E05
         (1002 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.45 
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    30   0.45 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.0  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   7.2  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    26   7.2  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   9.6  
SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces p...    26   9.6  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 30.3 bits (65), Expect = 0.45
 Identities = 17/47 (36%), Positives = 18/47 (38%)
 Frame = +1

Query: 697 PPPPGGAPXXXXPRXAPSVRXXPRAPXXXACAAXPGXXGPPPRXPXR 837
           PP    AP    PR APS    P  P   +  A      PPP  P R
Sbjct: 354 PPQGRSAPPPPPPRSAPSTGRQP--PPLSSSRAVSNPPAPPPAIPGR 398


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 30.3 bits (65), Expect = 0.45
 Identities = 16/44 (36%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
 Frame = +1

Query: 697  PPPPGGAPXXXXPRXAPSVRXXPRAPXXXACA--AXPGXXGPPP 822
            PPPP   P    P  AP+    P  P   A A    PG   P P
Sbjct: 1884 PPPPMALPKAGPPSAAPTSALPPAGPPAGATAISGNPGMPAPVP 1927


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +3

Query: 888 GXXPPPRGPPXPXXXGXPPPP 950
           G  PPP  PP     G PPPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPP 779



 Score = 26.6 bits (56), Expect = 5.5
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +3

Query: 897 PPPRGPPXPXXXGXPPPP 950
           P P  PP P   G PPPP
Sbjct: 748 PIPVPPPAPIMGGPPPPP 765


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +3

Query: 696  PPPPRRRPXPXXAPXRPLG 752
            PPPP   P P  AP  P G
Sbjct: 1708 PPPPMSVPPPPSAPPMPAG 1726



 Score = 26.2 bits (55), Expect = 7.2
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +3

Query: 897  PPPRGPPXPXXXGXPPPPXXXA 962
            PPP  PP P      PPP   A
Sbjct: 1716 PPPSAPPMPAGPPSAPPPPLPA 1737


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 18/48 (37%), Positives = 19/48 (39%)
 Frame = -2

Query: 839 GRXGXRGGGPXXPGXAAHAXXXGARGXXRTEGAXRGXXXXGAPPGGGG 696
           G  G RGG     G A      GARG     G  RG    G+  G GG
Sbjct: 20  GFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARG-GRGGSSGGRGG 66


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +3

Query: 888 GXXPPPRGPPXPXXXGXPPPP 950
           G  PPP  PP       PPPP
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPP 27


>SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 13/45 (28%), Positives = 19/45 (42%)
 Frame = -3

Query: 388 RXQGPRGXPGXPXKXXXXAXVLRXGAXRAXVXXGXXRXFXGGXRG 254
           R +GP+G PG P      + ++  G  +        R F GG  G
Sbjct: 473 RFEGPKGGPGMPEMLKPSSAIMGAGLGKDVALLTDGR-FSGGSHG 516


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.150    0.534 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,376,855
Number of Sequences: 5004
Number of extensions: 14071
Number of successful extensions: 49
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 519268360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)