Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_E05
(1002 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 33 0.42
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 33 0.42
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 33 0.42
Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical pr... 32 0.74
Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical pr... 32 0.74
AF003139-6|AAB54156.1| 327|Caenorhabditis elegans Collagen prot... 32 0.74
U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical pr... 31 0.98
Z73972-2|CAA98258.1| 316|Caenorhabditis elegans Hypothetical pr... 31 1.3
Z73972-1|CAA98257.1| 316|Caenorhabditis elegans Hypothetical pr... 31 1.3
X51623-1|CAA35955.1| 316|Caenorhabditis elegans collagen protein. 31 1.3
X51622-1|CAA35954.1| 316|Caenorhabditis elegans collagen protein. 31 1.3
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 31 1.3
Z78064-1|CAB01509.1| 313|Caenorhabditis elegans Hypothetical pr... 31 1.7
U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical pr... 31 1.7
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 30 2.3
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 30 2.3
AF036699-5|AAB88359.1| 290|Caenorhabditis elegans Collagen prot... 30 2.3
Z78064-2|CAB01508.2| 317|Caenorhabditis elegans Hypothetical pr... 30 3.0
Z69658-1|CAA93481.1| 418|Caenorhabditis elegans Hypothetical pr... 30 3.0
Z49938-3|CAA90188.1| 306|Caenorhabditis elegans Hypothetical pr... 30 3.0
U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protei... 29 3.9
U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protei... 29 3.9
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 29 3.9
AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular col... 29 3.9
Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical pr... 29 5.2
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 5.2
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 5.2
L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein. 29 5.2
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 5.2
Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical pr... 29 6.9
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 29 6.9
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 29 6.9
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 29 6.9
U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical pr... 29 6.9
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 29 6.9
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 29 6.9
AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily a... 29 6.9
AF045645-6|AAC02608.1| 314|Caenorhabditis elegans Collagen prot... 29 6.9
Z81124-1|CAB03369.1| 312|Caenorhabditis elegans Hypothetical pr... 28 9.1
U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical p... 28 9.1
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 28 9.1
AL132952-24|CAB61143.2| 351|Caenorhabditis elegans Hypothetical... 28 9.1
AC024214-13|AAM97984.1| 296|Caenorhabditis elegans Collagen pro... 28 9.1
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 32.7 bits (71), Expect = 0.42
Identities = 14/23 (60%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = +3
Query: 885 AGXXPPPR-GPPXPXXXGXPPPP 950
AG PPPR G P P G PPPP
Sbjct: 261 AGSPPPPRTGSPPPPPTGSPPPP 283
Score = 30.3 bits (65), Expect = 2.3
Identities = 12/19 (63%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Frame = +3
Query: 897 PPPRG-PPXPXXXGXPPPP 950
PPP G PP P G PPPP
Sbjct: 274 PPPTGSPPPPPAGGSPPPP 292
Score = 29.5 bits (63), Expect = 3.9
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = +3
Query: 897 PPPRGPPXPXXXGXPPPPXXXAXRXXXPGG 986
PP G P P G PPPP + GG
Sbjct: 258 PPAAGSPPPPRTGSPPPPPTGSPPPPPAGG 287
Score = 28.7 bits (61), Expect = 6.9
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +3
Query: 897 PPPRGPPXPXXXGXPPPP 950
PPP+G P G PPPP
Sbjct: 241 PPPKGSPPLAGSGSPPPP 258
Score = 28.7 bits (61), Expect = 6.9
Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Frame = +3
Query: 888 GXXPPPR--GPPXPXXXGXPPPP 950
G PPP+ G P P G PPPP
Sbjct: 310 GSLPPPQAGGSPPPAGTGSPPPP 332
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 32.7 bits (71), Expect = 0.42
Identities = 14/23 (60%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = +3
Query: 885 AGXXPPPR-GPPXPXXXGXPPPP 950
AG PPPR G P P G PPPP
Sbjct: 282 AGSPPPPRTGSPPPPPTGSPPPP 304
Score = 30.3 bits (65), Expect = 2.3
Identities = 12/19 (63%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Frame = +3
Query: 897 PPPRG-PPXPXXXGXPPPP 950
PPP G PP P G PPPP
Sbjct: 295 PPPTGSPPPPPAGGSPPPP 313
Score = 29.5 bits (63), Expect = 3.9
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = +3
Query: 897 PPPRGPPXPXXXGXPPPPXXXAXRXXXPGG 986
PP G P P G PPPP + GG
Sbjct: 279 PPAAGSPPPPRTGSPPPPPTGSPPPPPAGG 308
Score = 28.7 bits (61), Expect = 6.9
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +3
Query: 897 PPPRGPPXPXXXGXPPPP 950
PPP+G P G PPPP
Sbjct: 262 PPPKGSPPLAGSGSPPPP 279
Score = 28.7 bits (61), Expect = 6.9
Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Frame = +3
Query: 888 GXXPPPR--GPPXPXXXGXPPPP 950
G PPP+ G P P G PPPP
Sbjct: 331 GSLPPPQAGGSPPPAGTGSPPPP 353
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 32.7 bits (71), Expect = 0.42
Identities = 14/23 (60%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = +3
Query: 885 AGXXPPPR-GPPXPXXXGXPPPP 950
AG PPPR G P P G PPPP
Sbjct: 267 AGSPPPPRTGSPPPPPTGSPPPP 289
Score = 30.3 bits (65), Expect = 2.3
Identities = 12/19 (63%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Frame = +3
Query: 897 PPPRG-PPXPXXXGXPPPP 950
PPP G PP P G PPPP
Sbjct: 280 PPPTGSPPPPPAGGSPPPP 298
Score = 29.5 bits (63), Expect = 3.9
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = +3
Query: 897 PPPRGPPXPXXXGXPPPPXXXAXRXXXPGG 986
PP G P P G PPPP + GG
Sbjct: 264 PPAAGSPPPPRTGSPPPPPTGSPPPPPAGG 293
Score = 28.7 bits (61), Expect = 6.9
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +3
Query: 897 PPPRGPPXPXXXGXPPPP 950
PPP+G P G PPPP
Sbjct: 247 PPPKGSPPLAGSGSPPPP 264
Score = 28.7 bits (61), Expect = 6.9
Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Frame = +3
Query: 888 GXXPPPR--GPPXPXXXGXPPPP 950
G PPP+ G P P G PPPP
Sbjct: 316 GSLPPPQAGGSPPPAGTGSPPPP 338
>Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical
protein B0035.1b protein.
Length = 341
Score = 31.9 bits (69), Expect = 0.74
Identities = 18/47 (38%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Frame = +1
Query: 697 PPPPGGAPXXXXPRXAPSVRXXPRAPXXXACAAXPGXXG--PPPRXP 831
P P G P P P R P AP PG G PPPR P
Sbjct: 144 PMPSGMMPPRGMPGAYPPPRGYPPAPAPGVYMPPPGMPGAYPPPRMP 190
>Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical
protein B0035.1a protein.
Length = 298
Score = 31.9 bits (69), Expect = 0.74
Identities = 18/47 (38%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Frame = +1
Query: 697 PPPPGGAPXXXXPRXAPSVRXXPRAPXXXACAAXPGXXG--PPPRXP 831
P P G P P P R P AP PG G PPPR P
Sbjct: 144 PMPSGMMPPRGMPGAYPPPRGYPPAPAPGVYMPPPGMPGAYPPPRMP 190
>AF003139-6|AAB54156.1| 327|Caenorhabditis elegans Collagen protein
45 protein.
Length = 327
Score = 31.9 bits (69), Expect = 0.74
Identities = 18/50 (36%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Frame = +1
Query: 697 PPPPGGAPXXXXPRXAPSVRXXPRAPXXXACAAXPGXXGP--PPRXPXRP 840
PP P GAP R P P P G GP PP P RP
Sbjct: 187 PPGPTGAPGDKGSRGYPGESGEPGTPGSAGPKGNAGPAGPPGPPGYPGRP 236
>U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical
protein C50F7.5 protein.
Length = 309
Score = 31.5 bits (68), Expect = 0.98
Identities = 17/48 (35%), Positives = 18/48 (37%)
Frame = +1
Query: 697 PPPPGGAPXXXXPRXAPSVRXXPRAPXXXACAAXPGXXGPPPRXPXRP 840
PP PG P +PS P P PG GPP R P P
Sbjct: 226 PPSPG--PVDPSDEPSPSDPPGPPGPPGPPTRRPPGPPGPPTRRPPGP 271
>Z73972-2|CAA98258.1| 316|Caenorhabditis elegans Hypothetical
protein F15H10.2 protein.
Length = 316
Score = 31.1 bits (67), Expect = 1.3
Identities = 20/50 (40%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Frame = +1
Query: 697 PPPPGGAPXXXXPRXAPSVRXXPRAPXXXACAAXPGXXGP--PPRXPXRP 840
PP P GAP P AP AP AA PG GP PP +P
Sbjct: 177 PPGPSGAPGQKGPSGAPG------APGQSGGAALPGPPGPAGPPGPAGQP 220
>Z73972-1|CAA98257.1| 316|Caenorhabditis elegans Hypothetical
protein F15H10.1 protein.
Length = 316
Score = 31.1 bits (67), Expect = 1.3
Identities = 20/50 (40%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Frame = +1
Query: 697 PPPPGGAPXXXXPRXAPSVRXXPRAPXXXACAAXPGXXGP--PPRXPXRP 840
PP P GAP P AP AP AA PG GP PP +P
Sbjct: 177 PPGPSGAPGQKGPSGAPG------APGQSGGAALPGPPGPAGPPGPAGQP 220
>X51623-1|CAA35955.1| 316|Caenorhabditis elegans collagen protein.
Length = 316
Score = 31.1 bits (67), Expect = 1.3
Identities = 20/50 (40%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Frame = +1
Query: 697 PPPPGGAPXXXXPRXAPSVRXXPRAPXXXACAAXPGXXGP--PPRXPXRP 840
PP P GAP P AP AP AA PG GP PP +P
Sbjct: 177 PPGPSGAPGQKGPSGAPG------APGQSGGAALPGPPGPAGPPGPAGQP 220
>X51622-1|CAA35954.1| 316|Caenorhabditis elegans collagen protein.
Length = 316
Score = 31.1 bits (67), Expect = 1.3
Identities = 20/50 (40%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Frame = +1
Query: 697 PPPPGGAPXXXXPRXAPSVRXXPRAPXXXACAAXPGXXGP--PPRXPXRP 840
PP P GAP P AP AP AA PG GP PP +P
Sbjct: 177 PPGPSGAPGQKGPSGAPG------APGQSGGAALPGPPGPAGPPGPAGQP 220
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 31.1 bits (67), Expect = 1.3
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = +3
Query: 897 PPPRGPPXPXXXGXPPPP 950
PPP PP P G PPPP
Sbjct: 576 PPPPPPPPPMLGGPPPPP 593
Score = 29.5 bits (63), Expect = 3.9
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +3
Query: 885 AGXXPPPRGPPXPXXXGXPPPP 950
+G PPP PP P G PPPP
Sbjct: 573 SGAPPPP--PPPPPMLGGPPPP 592
>Z78064-1|CAB01509.1| 313|Caenorhabditis elegans Hypothetical
protein F57B1.3 protein.
Length = 313
Score = 30.7 bits (66), Expect = 1.7
Identities = 16/41 (39%), Positives = 17/41 (41%)
Frame = +1
Query: 697 PPPPGGAPXXXXPRXAPSVRXXPRAPXXXACAAXPGXXGPP 819
PP P GAP P AP V P + PG GPP
Sbjct: 174 PPGPSGAPGQKGPSGAPGV---PGQTGGASLPGPPGPAGPP 211
>U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical
protein C34D4.11 protein.
Length = 136
Score = 30.7 bits (66), Expect = 1.7
Identities = 17/48 (35%), Positives = 17/48 (35%)
Frame = -2
Query: 839 GRXGXRGGGPXXPGXAAHAXXXGARGXXRTEGAXRGXXXXGAPPGGGG 696
G G GGG G G RG G RG G GGGG
Sbjct: 70 GGWGNNGGGGNWGGNGGGGNGGGGRGGGGGGGGGRGGGGGGRGGGGGG 117
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 30.3 bits (65), Expect = 2.3
Identities = 27/104 (25%), Positives = 28/104 (26%), Gaps = 2/104 (1%)
Frame = +1
Query: 184 PXPXPXXXXPGXXPXXXQXXXXXXPGPPLXXYAXXPXXLXRXXPPPVKRXPXRXLXGA-- 357
P P P G P PGPP P R PP + P G
Sbjct: 285 PRPPPPPSS-GMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRY 343
Query: 358 PXGXPWVLXPGXXKXXXXXXPPPXRGXXPAXPXXXXXXPXXXXP 489
P G P P PPP PA P P P
Sbjct: 344 PGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPPPPPP 387
Score = 30.3 bits (65), Expect = 2.3
Identities = 14/39 (35%), Positives = 15/39 (38%)
Frame = +2
Query: 257 PXPPXKXTPGPPXYXXAXSPXP*NXGXXXXFXGXPXGPP 373
P PP TPGPP P P + G P PP
Sbjct: 300 PPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPP 338
Score = 29.9 bits (64), Expect = 3.0
Identities = 26/105 (24%), Positives = 27/105 (25%)
Frame = +1
Query: 184 PXPXPXXXXPGXXPXXXQXXXXXXPGPPLXXYAXXPXXLXRXXPPPVKRXPXRXLXGAPX 363
P P P P P PP P PPP R + G P
Sbjct: 276 PMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPP 335
Query: 364 GXPWVLXPGXXKXXXXXXPPPXRGXXPAXPXXXXXXPXXXXPXXP 498
P PG PPP R A P P P P
Sbjct: 336 PPP----PGMRYPGGMPPPPPPR-YPSAGPGMYPPPPPSRPPAPP 375
Score = 28.7 bits (61), Expect = 6.9
Identities = 17/49 (34%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Frame = +1
Query: 697 PPPPGGAPXXXXPRXAPSVRXXPRAPXXXACAAXPGXXGPPP-RXPXRP 840
PPPP P P P+ PR P + P PPP R P P
Sbjct: 265 PPPPSVTPMP--PPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPP 311
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 30.3 bits (65), Expect = 2.3
Identities = 27/104 (25%), Positives = 28/104 (26%), Gaps = 2/104 (1%)
Frame = +1
Query: 184 PXPXPXXXXPGXXPXXXQXXXXXXPGPPLXXYAXXPXXLXRXXPPPVKRXPXRXLXGA-- 357
P P P G P PGPP P R PP + P G
Sbjct: 295 PRPPPPPSS-GMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRY 353
Query: 358 PXGXPWVLXPGXXKXXXXXXPPPXRGXXPAXPXXXXXXPXXXXP 489
P G P P PPP PA P P P
Sbjct: 354 PGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPPPPPP 397
Score = 30.3 bits (65), Expect = 2.3
Identities = 14/39 (35%), Positives = 15/39 (38%)
Frame = +2
Query: 257 PXPPXKXTPGPPXYXXAXSPXP*NXGXXXXFXGXPXGPP 373
P PP TPGPP P P + G P PP
Sbjct: 310 PPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPP 348
Score = 29.9 bits (64), Expect = 3.0
Identities = 26/105 (24%), Positives = 27/105 (25%)
Frame = +1
Query: 184 PXPXPXXXXPGXXPXXXQXXXXXXPGPPLXXYAXXPXXLXRXXPPPVKRXPXRXLXGAPX 363
P P P P P PP P PPP R + G P
Sbjct: 286 PMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPP 345
Query: 364 GXPWVLXPGXXKXXXXXXPPPXRGXXPAXPXXXXXXPXXXXPXXP 498
P PG PPP R A P P P P
Sbjct: 346 PPP----PGMRYPGGMPPPPPPR-YPSAGPGMYPPPPPSRPPAPP 385
Score = 28.7 bits (61), Expect = 6.9
Identities = 17/49 (34%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Frame = +1
Query: 697 PPPPGGAPXXXXPRXAPSVRXXPRAPXXXACAAXPGXXGPPP-RXPXRP 840
PPPP P P P+ PR P + P PPP R P P
Sbjct: 275 PPPPSVTPMP--PPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPP 321
>AF036699-5|AAB88359.1| 290|Caenorhabditis elegans Collagen protein
105 protein.
Length = 290
Score = 30.3 bits (65), Expect = 2.3
Identities = 17/49 (34%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Frame = +1
Query: 700 PPPGGAPXXXXPRXAPSVRXXPRAPXXXACAAXPGXXGP--PPRXPXRP 840
P P G P P+ AP P P PG GP PP P P
Sbjct: 138 PCPAGPPGKPGPQGAPGDIGQPGNPGERGMDGEPGPPGPTGPPGEPGLP 186
>Z78064-2|CAB01508.2| 317|Caenorhabditis elegans Hypothetical
protein F57B1.4 protein.
Length = 317
Score = 29.9 bits (64), Expect = 3.0
Identities = 19/50 (38%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Frame = +1
Query: 697 PPPPGGAPXXXXPRXAPSVRXXPRAPXXXACAAXPGXXGP--PPRXPXRP 840
PP P GAP P AP AP A+ PG GP PP +P
Sbjct: 178 PPGPSGAPGQKGPSGAPG------APGQSGGASLPGPPGPAGPPGPSGQP 221
>Z69658-1|CAA93481.1| 418|Caenorhabditis elegans Hypothetical
protein C36H8.1 protein.
Length = 418
Score = 29.9 bits (64), Expect = 3.0
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +3
Query: 897 PPPRGPPXPXXXGXPPPP 950
PPP+ PP P PPPP
Sbjct: 182 PPPQEPPKPVEQAAPPPP 199
>Z49938-3|CAA90188.1| 306|Caenorhabditis elegans Hypothetical
protein F38A3.2 protein.
Length = 306
Score = 29.9 bits (64), Expect = 3.0
Identities = 14/40 (35%), Positives = 14/40 (35%)
Frame = +1
Query: 697 PPPPGGAPXXXXPRXAPSVRXXPRAPXXXACAAXPGXXGP 816
PP P G P P P AP A PG GP
Sbjct: 166 PPGPAGNPGPKGPSGNAGADGQPGAPGNAGAAGAPGAPGP 205
>U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protein
33 protein.
Length = 304
Score = 29.5 bits (63), Expect = 3.9
Identities = 17/50 (34%), Positives = 17/50 (34%), Gaps = 2/50 (4%)
Frame = +1
Query: 697 PPPPGGAPXXXXPRXAPSVRXXPRAPXXXACAAXPGXXGPP--PRXPXRP 840
PP P GAP AP P PG G P P P RP
Sbjct: 160 PPGPPGAPGDAGTNGAPGAPGGDAPPGEAGPKGPPGPPGSPGAPGEPGRP 209
>U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protein
34 protein.
Length = 299
Score = 29.5 bits (63), Expect = 3.9
Identities = 17/49 (34%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Frame = +1
Query: 700 PPPGGAPXXXXPRXAPSVRXXPRAPXXXACAAXPGXXGP--PPRXPXRP 840
P P G P P P P +P A PG GP PP P P
Sbjct: 147 PCPQGPPGPPGPPGPPGDSGEPGSPGLPGQDAAPGEPGPKGPPGPPGAP 195
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 29.5 bits (63), Expect = 3.9
Identities = 22/92 (23%), Positives = 25/92 (27%)
Frame = +2
Query: 263 PPXKXTPGPPXYXXAXSPXP*NXGXXXXFXGXPXGPPGSLXPXXXKXGXXGXPHRXGGAX 442
PP + P P P + GPPG+ P G P GG
Sbjct: 351 PPPQQFHAPSPQSFGGPPPPVSSAPGNFAPPPQSGPPGAFAP---PPSAFGAPQGPGGPG 407
Query: 443 XXXXRXXXGPRXXXPPXXPVAGXXGXXPPAXG 538
GP P G G PP G
Sbjct: 408 GYGPPPPGGPGAPGSYGPPQGGPGGFGPPPPG 439
>AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular
collagen RAM-4 protein.
Length = 299
Score = 29.5 bits (63), Expect = 3.9
Identities = 17/49 (34%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Frame = +1
Query: 700 PPPGGAPXXXXPRXAPSVRXXPRAPXXXACAAXPGXXGP--PPRXPXRP 840
P P G P P P P +P A PG GP PP P P
Sbjct: 147 PCPQGPPGPPGPPGPPGDSGEPGSPGLPGQDAAPGEPGPKGPPGPPGAP 195
>Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical
protein C02C6.1a protein.
Length = 830
Score = 29.1 bits (62), Expect = 5.2
Identities = 18/50 (36%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Frame = +1
Query: 697 PPPPGGAPXXXXPRXAPSVRXXPRAPXXXACAAXPGXXGP--PPRXPXRP 840
P PPGG PR P P P PG G PP P RP
Sbjct: 771 PAPPGGRQAPMPPRGGPGA---PPPPGMRPPPGAPGGGGGMYPPLIPTRP 817
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.1 bits (62), Expect = 5.2
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +3
Query: 888 GXXPPPRGPPXPXXXGXPPPP 950
G PPP PP G PPPP
Sbjct: 767 GCPPPPPPPPPGGFKGGPPPP 787
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.1 bits (62), Expect = 5.2
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +3
Query: 888 GXXPPPRGPPXPXXXGXPPPP 950
G PPP PP G PPPP
Sbjct: 767 GCPPPPPPPPPGGFKGGPPPP 787
>L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein.
Length = 830
Score = 29.1 bits (62), Expect = 5.2
Identities = 18/50 (36%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Frame = +1
Query: 697 PPPPGGAPXXXXPRXAPSVRXXPRAPXXXACAAXPGXXGP--PPRXPXRP 840
P PPGG PR P P P PG G PP P RP
Sbjct: 771 PAPPGGRQAPMPPRGGPGA---PPPPGMRPPPGAPGGGGGMYPPLIPTRP 817
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.1 bits (62), Expect = 5.2
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +3
Query: 888 GXXPPPRGPPXPXXXGXPPPP 950
G PPP PP G PPPP
Sbjct: 350 GCPPPPPPPPPGGFKGGPPPP 370
>Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical
protein F12F6.6 protein.
Length = 1126
Score = 28.7 bits (61), Expect = 6.9
Identities = 18/58 (31%), Positives = 20/58 (34%)
Frame = +2
Query: 263 PPXKXTPGPPXYXXAXSPXP*NXGXXXXFXGXPXGPPGSLXPXXXKXGXXGXPHRXGG 436
PP + PG P +P P G F GP G P G G P GG
Sbjct: 286 PPGQGGPGMPGSFPPGAPGPGGPGMPGSFAPGAPGPGG---PGGYPSGGPGMPGMQGG 340
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 28.7 bits (61), Expect = 6.9
Identities = 16/45 (35%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Frame = +1
Query: 700 PPPGGAPXXXXPRXAPSVRXXPRAPXXXACAAXPGXXGPP-PRXP 831
P PGG P P P P A + PG GPP P P
Sbjct: 149 PCPGGPPGPAGPAGPPGPPGPDGNPGSPAGPSGPGPAGPPGPAGP 193
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 28.7 bits (61), Expect = 6.9
Identities = 16/45 (35%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Frame = +1
Query: 700 PPPGGAPXXXXPRXAPSVRXXPRAPXXXACAAXPGXXGPP-PRXP 831
P PGG P P P P A + PG GPP P P
Sbjct: 149 PCPGGPPGPAGPAGPPGPPGPDGNPGSPAGPSGPGPAGPPGPAGP 193
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 28.7 bits (61), Expect = 6.9
Identities = 16/47 (34%), Positives = 17/47 (36%)
Frame = +1
Query: 697 PPPPGGAPXXXXPRXAPSVRXXPRAPXXXACAAXPGXXGPPPRXPXR 837
PPPP P PR +P R P P P PR P R
Sbjct: 140 PPPPPRVPRTPPPR-SPPPRRPPMTPPSPQRRPPRTPPSPEPRNPPR 185
>U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical
protein B0280.13 protein.
Length = 616
Score = 28.7 bits (61), Expect = 6.9
Identities = 15/48 (31%), Positives = 15/48 (31%)
Frame = +1
Query: 697 PPPPGGAPXXXXPRXAPSVRXXPRAPXXXACAAXPGXXGPPPRXPXRP 840
PPPP P V P P A P PPP P P
Sbjct: 474 PPPPSRIPNPSPSPQPAEVSKSPPPPPPLPPIATPSSVPPPPPPPPPP 521
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 28.7 bits (61), Expect = 6.9
Identities = 16/45 (35%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Frame = +1
Query: 700 PPPGGAPXXXXPRXAPSVRXXPRAPXXXACAAXPGXXGPP-PRXP 831
P PGG P P P P A + PG GPP P P
Sbjct: 149 PCPGGPPGPAGPAGPPGPPGPDGNPGSPAGPSGPGPAGPPGPAGP 193
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 28.7 bits (61), Expect = 6.9
Identities = 16/45 (35%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Frame = +1
Query: 700 PPPGGAPXXXXPRXAPSVRXXPRAPXXXACAAXPGXXGPP-PRXP 831
P PGG P P P P A + PG GPP P P
Sbjct: 149 PCPGGPPGPAGPAGPPGPPGPDGNPGSPAGPSGPGPAGPPGPAGP 193
>AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily
assigned gene nameprotein 268 protein.
Length = 881
Score = 28.7 bits (61), Expect = 6.9
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +3
Query: 897 PPPRGPPXPXXXGXPPPP 950
PPP PP P PPPP
Sbjct: 85 PPPPPPPPPTLKAPPPPP 102
>AF045645-6|AAC02608.1| 314|Caenorhabditis elegans Collagen protein
101 protein.
Length = 314
Score = 28.7 bits (61), Expect = 6.9
Identities = 15/41 (36%), Positives = 16/41 (39%)
Frame = +1
Query: 697 PPPPGGAPXXXXPRXAPSVRXXPRAPXXXACAAXPGXXGPP 819
PP P GAP P AP P + PG GPP
Sbjct: 175 PPGPSGAPGQKGPSGAPG---QPGRSGGASLPGPPGPAGPP 212
>Z81124-1|CAB03369.1| 312|Caenorhabditis elegans Hypothetical
protein T21B4.2 protein.
Length = 312
Score = 28.3 bits (60), Expect = 9.1
Identities = 14/41 (34%), Positives = 14/41 (34%)
Frame = +1
Query: 697 PPPPGGAPXXXXPRXAPSVRXXPRAPXXXACAAXPGXXGPP 819
PP P G P AP P A PG GPP
Sbjct: 170 PPGPAGPAGNAGPPGAPGGPGAPGNTPSGGAAGPPGPPGPP 210
>U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical
protein F25B5.7c protein.
Length = 282
Score = 28.3 bits (60), Expect = 9.1
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = -3
Query: 985 PPGXXXRXAXXXGGGGXPXXXGXGGPRGGG 896
PPG G GG P G GGP G G
Sbjct: 167 PPGGMGGPPGHGGMGGPPGHGGQGGPPGHG 196
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 28.3 bits (60), Expect = 9.1
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = -3
Query: 985 PPGXXXRXAXXXGGGGXPXXXGXGGPRGGG 896
PPG G GG P G GGP G G
Sbjct: 447 PPGGMGGPPGHGGMGGPPGHGGQGGPPGHG 476
>AL132952-24|CAB61143.2| 351|Caenorhabditis elegans Hypothetical
protein Y51H4A.9 protein.
Length = 351
Score = 28.3 bits (60), Expect = 9.1
Identities = 16/40 (40%), Positives = 17/40 (42%)
Frame = +1
Query: 697 PPPPGGAPXXXXPRXAPSVRXXPRAPXXXACAAXPGXXGP 816
PP P GAP P AP AP +A PG GP
Sbjct: 212 PPGPSGAPGQKGPSGAPG------APGQSGGSALPGPPGP 245
>AC024214-13|AAM97984.1| 296|Caenorhabditis elegans Collagen
protein 106 protein.
Length = 296
Score = 28.3 bits (60), Expect = 9.1
Identities = 21/55 (38%), Positives = 21/55 (38%), Gaps = 7/55 (12%)
Frame = -2
Query: 839 GRXGXRG-----GGPXXPGXAAHAXXXGARGXXRTEGAXRGXXXXGAP--PGGGG 696
GR G RG G PG A H G RG GA GA PG GG
Sbjct: 189 GRAGPRGPPGAKGQTYLPGSAGHPGNSGRRGPPGPPGANGKNGKQGADGIPGAGG 243
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.315 0.150 0.534
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,892,407
Number of Sequences: 27780
Number of extensions: 227350
Number of successful extensions: 1970
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1805
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2626021738
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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