Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_E03
         (1085 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   1.2  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   3.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   4.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   4.7  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   8.3  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   8.3  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 25.0 bits (52), Expect = 1.2
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +2

Query: 938  PPPPPPPXS 964
            PPPPPPP S
Sbjct: 1355 PPPPPPPPS 1363



 Score = 25.0 bits (52), Expect = 1.2
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +2

Query: 938  PPPPPPPXS 964
            PPPPPPP S
Sbjct: 1356 PPPPPPPSS 1364



 Score = 21.0 bits (42), Expect(2) = 2.5
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +1

Query: 868  PPPPPP 885
            PPPPPP
Sbjct: 1355 PPPPPP 1360



 Score = 20.6 bits (41), Expect(2) = 2.5
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +1

Query: 979  PPPPSPP 999
            PPPP PP
Sbjct: 1356 PPPPPPP 1362


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.4 bits (48), Expect = 3.6
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -3

Query: 993 GGGGGXXXXXEXGGGGGGGV 934
           G  GG        GGGGGG+
Sbjct: 33  GASGGSIVVGANNGGGGGGL 52


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 3.6
 Identities = 12/37 (32%), Positives = 13/37 (35%)
 Frame = +1

Query: 937  APPPPPTXLXXXXXPPPPSPPFXXXPPXXNXPXXPPP 1047
            AP P P+       P   SPP     P    P   PP
Sbjct: 20   APGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 22.2 bits (45), Expect = 8.3
 Identities = 12/37 (32%), Positives = 14/37 (37%)
 Frame = +3

Query: 942  PPPPHPXXXXXGPPPPLPSXXXXXPPXQXTXPXSSXP 1052
            P PP P        PPLP+      P   T P  + P
Sbjct: 416  PMPPIPNMSNMSGMPPLPNMPGSM-PTMPTMPSMAGP 451


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 4.7
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -1

Query: 992  EGGGGXXXXXXXVGGGGGA 936
            EGGGG       +GG GGA
Sbjct: 1704 EGGGGSLAGLGGLGGLGGA 1722


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 4.7
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -1

Query: 992  EGGGGXXXXXXXVGGGGGA 936
            EGGGG       +GG GGA
Sbjct: 1700 EGGGGSLAGLGGLGGLGGA 1718


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 8.3
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 941 PPPPPPXS 964
           PPPPPP S
Sbjct: 343 PPPPPPSS 350


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 8.3
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +3

Query: 96  FRDLXKEAXXGRPXLXXXXXP 158
           FRD+ KE   G+P L     P
Sbjct: 485 FRDMHKELCDGKPGLCDAMKP 505


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,260
Number of Sequences: 438
Number of extensions: 10060
Number of successful extensions: 33
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 36391302
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)