Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_E01
         (1016 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    31   0.34 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.60 
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    29   1.0  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   7.4  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   9.8  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 30.7 bits (66), Expect = 0.34
 Identities = 19/76 (25%), Positives = 20/76 (26%)
 Frame = +2

Query: 578 PPXPGEGAGXPXRXXPPPPXPXTGXXXGXRXPXKXXXXXXXXXXXXXXXXPVXTPPPRLX 757
           PP P      P    P P  P          P K                PV +PP    
Sbjct: 130 PPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPS 189

Query: 758 XPRAXPPXKXPXXAPP 805
            P A PP       PP
Sbjct: 190 LPSAVPPMPPKVPPPP 205


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.9 bits (64), Expect = 0.60
 Identities = 12/34 (35%), Positives = 14/34 (41%)
 Frame = +2

Query: 890 PPXPTPPXXXXXXPAAXPPNXPXXXXRXXXQKPP 991
           PP PTPP      P + PP+ P          PP
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPP 448



 Score = 26.2 bits (55), Expect = 7.4
 Identities = 23/111 (20%), Positives = 27/111 (24%), Gaps = 1/111 (0%)
 Frame = +2

Query: 614 RXXPPPPXPXTGXXXGXRXPXKXXXXXXXXXXXXXXXXPVXTPPPRLXXPRAXPPXKXPX 793
           R  PPPP P +    G + P                  P  + P       A      P 
Sbjct: 358 RSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPV 417

Query: 794 XAPPPXSXTXXXXXXXXXXXXXXXXXXXGXPXPP-XPTPPXXXXXXPAAXP 943
             PP    +                     P PP  P  P      PAA P
Sbjct: 418 PTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPP 468


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 740  PPPRLXXPRAXPPXKXPXXAPPP 808
            PPP +  P+A PP   P  A PP
Sbjct: 1884 PPPPMALPKAGPPSAAPTSALPP 1906


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = +2

Query: 578 PPXPGEGAGXPXRXXPPPPXPXTG 649
           PP PG     P    PPPP    G
Sbjct: 765 PPPPGVAGAGPPPPPPPPPAVSAG 788


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 11/36 (30%), Positives = 13/36 (36%)
 Frame = +2

Query: 884 PXPPXPTPPXXXXXXPAAXPPNXPXXXXRXXXQKPP 991
           P  P P PP      P+  PP  P    +    K P
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPPPGYVKKRKNKTP 41


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.312    0.137    0.459 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,359,294
Number of Sequences: 5004
Number of extensions: 12237
Number of successful extensions: 51
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 529254290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)