Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_D24
         (1196 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC021207-1|AAH21207.1|  321|Homo sapiens atonal homolog 8 (Droso...    32   4.7  
AK074681-1|BAC11135.1|  321|Homo sapiens protein ( Homo sapiens ...    32   4.7  
AK027614-1|BAB55233.1|  321|Homo sapiens protein ( Homo sapiens ...    32   4.7  
AF529205-1|AAO85773.1|  321|Homo sapiens basic helix-loop-helix ...    32   4.7  
AF419855-1|AAP97290.1|  820|Homo sapiens Ser/Arg-related nuclear...    32   4.7  
AF048977-1|AAC09321.1|  820|Homo sapiens Ser/Arg-related nuclear...    32   4.7  

>BC021207-1|AAH21207.1|  321|Homo sapiens atonal homolog 8
            (Drosophila) protein.
          Length = 321

 Score = 31.9 bits (69), Expect = 4.7
 Identities = 16/62 (25%), Positives = 21/62 (33%)
 Frame = +1

Query: 991  PPPPXGXXXRAPXAPXXRPRRDSNPAXHSXXXSXSXXXRTXXAPHXPXPPXTPPREXEXX 1170
            PPPP     +AP  P  +P R+  P       +          P  P PP +  R     
Sbjct: 126  PPPPPAPQSQAPGGPEAQPFREPGPRPRILLCAPPARPAPSAPPAPPAPPESTVRPAPPT 185

Query: 1171 TP 1176
             P
Sbjct: 186  RP 187


>AK074681-1|BAC11135.1|  321|Homo sapiens protein ( Homo sapiens cDNA
            FLJ90200 fis, clone MAMMA1001615, weakly similar to
            NEUROGENIC DIFFERENTIATION FACTOR 1. ).
          Length = 321

 Score = 31.9 bits (69), Expect = 4.7
 Identities = 16/62 (25%), Positives = 21/62 (33%)
 Frame = +1

Query: 991  PPPPXGXXXRAPXAPXXRPRRDSNPAXHSXXXSXSXXXRTXXAPHXPXPPXTPPREXEXX 1170
            PPPP     +AP  P  +P R+  P       +          P  P PP +  R     
Sbjct: 126  PPPPPAPQSQAPGGPEAQPFREPGPRPRILLCAPPARPAPSAPPAPPAPPESTVRPAPPT 185

Query: 1171 TP 1176
             P
Sbjct: 186  RP 187


>AK027614-1|BAB55233.1|  321|Homo sapiens protein ( Homo sapiens cDNA
            FLJ14708 fis, clone NT2RP3000603, weakly similar to
            NEUROGENIC DIFFERENTIATION FACTOR 1. ).
          Length = 321

 Score = 31.9 bits (69), Expect = 4.7
 Identities = 16/62 (25%), Positives = 21/62 (33%)
 Frame = +1

Query: 991  PPPPXGXXXRAPXAPXXRPRRDSNPAXHSXXXSXSXXXRTXXAPHXPXPPXTPPREXEXX 1170
            PPPP     +AP  P  +P R+  P       +          P  P PP +  R     
Sbjct: 126  PPPPPAPQSQAPGGPEAQPFREPGPRPRILLCAPPARPAPSAPPAPPAPPESTVRPAPPT 185

Query: 1171 TP 1176
             P
Sbjct: 186  RP 187


>AF529205-1|AAO85773.1|  321|Homo sapiens basic helix-loop-helix
            transcription factor protein.
          Length = 321

 Score = 31.9 bits (69), Expect = 4.7
 Identities = 16/62 (25%), Positives = 21/62 (33%)
 Frame = +1

Query: 991  PPPPXGXXXRAPXAPXXRPRRDSNPAXHSXXXSXSXXXRTXXAPHXPXPPXTPPREXEXX 1170
            PPPP     +AP  P  +P R+  P       +          P  P PP +  R     
Sbjct: 126  PPPPPAPQSQAPGGPEAQPFREPGPRPRILLCAPPARPAPSAPPAPPAPPESTVRPAPPT 185

Query: 1171 TP 1176
             P
Sbjct: 186  RP 187


>AF419855-1|AAP97290.1|  820|Homo sapiens Ser/Arg-related nuclear
            matrix protein protein.
          Length = 820

 Score = 31.9 bits (69), Expect = 4.7
 Identities = 17/54 (31%), Positives = 24/54 (44%)
 Frame = +1

Query: 1018 RAPXAPXXRPRRDSNPAXHSXXXSXSXXXRTXXAPHXPXPPXTPPREXEXXTPR 1179
            R+   P   P+R S+P   +   S S         H P PP TPP+  +  TP+
Sbjct: 365  RSRSPPKKPPKRTSSPPRKTRRLSPSASPPRRR--HRPSPPATPPKTRDSPTPQ 416


>AF048977-1|AAC09321.1|  820|Homo sapiens Ser/Arg-related nuclear
            matrix protein protein.
          Length = 820

 Score = 31.9 bits (69), Expect = 4.7
 Identities = 17/54 (31%), Positives = 24/54 (44%)
 Frame = +1

Query: 1018 RAPXAPXXRPRRDSNPAXHSXXXSXSXXXRTXXAPHXPXPPXTPPREXEXXTPR 1179
            R+   P   P+R S+P   +   S S         H P PP TPP+  +  TP+
Sbjct: 365  RSRSPPKKPPKRTSSPPRKTRRLSPSASPPRRR--HRPSPPATPPKTRDSPTPQ 416


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,760,112
Number of Sequences: 237096
Number of extensions: 958868
Number of successful extensions: 1786
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1772
length of database: 76,859,062
effective HSP length: 92
effective length of database: 55,046,230
effective search space used: 16844146380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)