Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_D23
(945 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0299 - 17051570-17052474,17053542-17053755 30 3.1
03_06_0758 - 36052261-36052301,36052463-36052697,36052895-360529... 29 4.1
09_06_0107 + 20907560-20908491,20908511-20908625,20908967-209090... 29 7.1
02_05_0112 - 25931775-25932078,25932554-25932732,25934033-25935184 29 7.1
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 28 9.4
08_01_0059 - 394001-394708 28 9.4
05_01_0028 + 182528-183852,183967-184127,184872-185116,185330-18... 28 9.4
>12_02_0299 - 17051570-17052474,17053542-17053755
Length = 372
Score = 29.9 bits (64), Expect = 3.1
Identities = 27/84 (32%), Positives = 29/84 (34%), Gaps = 10/84 (11%)
Frame = +3
Query: 714 PXPHLDXXKFLAVSPXXXPPXPLP---VRTLXXYXXPVRPFPLXGX------VAPFPYLP 866
P P FL P P PLP T P PFPL PFP+LP
Sbjct: 222 PRPWFPPIPFLTPPPPPFLPFPLPPIPFLTPPSPPPPAFPFPLPPWPWAPPPAFPFPHLP 281
Query: 867 XXXS-XFXVXPPPXLXLXPXPR*P 935
S PPP P P+ P
Sbjct: 282 PIFSPPSPPPPPPPAFPFPFPQLP 305
Score = 29.1 bits (62), Expect = 5.4
Identities = 19/62 (30%), Positives = 23/62 (37%)
Frame = +3
Query: 741 FLAVSPXXXPPXPLPVRTLXXYXXPVRPFPLXGXVAPFPYLPXXXSXFXVXPPPXLXLXP 920
F + P PP P P P PFP + P P+ P S + PPP P
Sbjct: 277 FPHLPPIFSPPSPPPP------PPPAFPFPFP-QLPPLPHFPPLPSFYPSPPPPPPPPPP 329
Query: 921 XP 926
P
Sbjct: 330 PP 331
>03_06_0758 -
36052261-36052301,36052463-36052697,36052895-36052966,
36056477-36056567,36056650-36056872,36056964-36057300,
36057406-36057588
Length = 393
Score = 29.5 bits (63), Expect = 4.1
Identities = 20/66 (30%), Positives = 24/66 (36%), Gaps = 3/66 (4%)
Frame = +3
Query: 747 AVSPXXXPPXPLPVRTLXXYXXPVRPFP---LXGXVAPFPYLPXXXSXFXVXPPPXLXLX 917
A +P PP P+ V P+RPF L P P + PPP L
Sbjct: 139 ATAPPPPPPPPMAVAPPPFLPPPLRPFAAPLLFHHDMASPVSPVSPIYYVGPPPPPEALR 198
Query: 918 PXPR*P 935
P P P
Sbjct: 199 PLPPFP 204
>09_06_0107 +
20907560-20908491,20908511-20908625,20908967-20909058,
20909293-20909556,20910714-20911494
Length = 727
Score = 28.7 bits (61), Expect = 7.1
Identities = 15/55 (27%), Positives = 22/55 (40%)
Frame = +1
Query: 739 NSLPFPPXXPPXCPXLXGPXPXTGXLSALSPFXXAWPLSHTSRXXXPXSGXXPPP 903
++ P PP PP P P P + +P +W + +S P PPP
Sbjct: 70 SAAPPPPQTPPSPPPPPPPPPPPPPPLSPTPTTTSWTTNSSSISASPILPPPPPP 124
>02_05_0112 - 25931775-25932078,25932554-25932732,25934033-25935184
Length = 544
Score = 28.7 bits (61), Expect = 7.1
Identities = 16/41 (39%), Positives = 18/41 (43%)
Frame = +3
Query: 813 PVRPFPLXGXVAPFPYLPXXXSXFXVXPPPXLXLXPXPR*P 935
P RP AP+PY P + F PPP L P P P
Sbjct: 264 PRRPNSWAPSPAPWPYTPGQQAKF--SPPPALYASPTPSPP 302
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 28.3 bits (60), Expect = 9.4
Identities = 26/103 (25%), Positives = 34/103 (33%), Gaps = 2/103 (1%)
Frame = +3
Query: 600 PKAGQRP*XGXXPGCXPXXXGSAPPDXHXKXRLSRXXVPXPHLDXXKFLAVSPXXXPPXP 779
P +G +P P P P + + P P L + P PP
Sbjct: 553 PPSGNKPAFSPPPPPPPPPPPPLPQSNYASSQ-PPPPPPPPPLPNCLVPSPPPPPPPPPI 611
Query: 780 LPVRTLXXYXXPVRPFPLXGXVAPFPYLPXXXS--XFXVXPPP 902
LP R++ P P P + P P P S V PPP
Sbjct: 612 LPNRSVPPPPPPPPPLPNHSVLPPPPPPPPPPSLPNRLVPPPP 654
>08_01_0059 - 394001-394708
Length = 235
Score = 28.3 bits (60), Expect = 9.4
Identities = 19/54 (35%), Positives = 21/54 (38%)
Frame = +3
Query: 747 AVSPXXXPPXPLPVRTLXXYXXPVRPFPLXGXVAPFPYLPXXXSXFXVXPPPXL 908
A P PP P P R P+RP P P PY P S PPP +
Sbjct: 10 APPPPATPPPP-PRRAPPPPSPPIRPPP---PPTPRPYAPPPPSHPLAPPPPHI 59
>05_01_0028 +
182528-183852,183967-184127,184872-185116,185330-186073
Length = 824
Score = 28.3 bits (60), Expect = 9.4
Identities = 20/58 (34%), Positives = 21/58 (36%)
Frame = +3
Query: 753 SPXXXPPXPLPVRTLXXYXXPVRPFPLXGXVAPFPYLPXXXSXFXVXPPPXLXLXPXP 926
SP PP PLP T+ P P P P P P PPP L P P
Sbjct: 53 SPDSPPPPPLPTPTV---TTPTPPPP-----PPAPRPPRRHHRIPPPPPPLLPTPPPP 102
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,496,568
Number of Sequences: 37544
Number of extensions: 291900
Number of successful extensions: 498
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2717819680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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