Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_D22
(913 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ... 64 4e-09
UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9; ... 62 1e-08
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ... 59 2e-07
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE... 58 3e-07
UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular organi... 55 3e-06
UniRef50_UPI00015C640B Cluster: hypothetical protein CKO_pCKO2p0... 47 6e-04
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru... 45 0.002
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h... 44 0.004
UniRef50_P03845 Cluster: Putative uncharacterized protein 1; n=4... 42 0.022
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma... 41 0.038
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob... 40 0.088
UniRef50_P03846 Cluster: Putative uncharacterized protein 1; n=2... 38 0.36
UniRef50_Q12GC2 Cluster: Putative uncharacterized protein precur... 34 5.8
UniRef50_A2SSD8 Cluster: Putative uncharacterized protein; n=1; ... 34 5.8
>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
root|Rep: Putative uncharacterized protein - Escherichia
coli
Length = 61
Score = 64.5 bits (150), Expect = 4e-09
Identities = 30/38 (78%), Positives = 30/38 (78%)
Frame = -1
Query: 508 PFAGLLLTCSFLRYPLILWITVLPPLSELIPLAAAERP 395
P LLTCSF YPLILWITVLPPLSEL PLAA ERP
Sbjct: 19 PVLCFLLTCSFRLYPLILWITVLPPLSELTPLAAVERP 56
>UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9;
root|Rep: Putative uncharacterized protein - Salmonella
typhimurium
Length = 127
Score = 62.5 bits (145), Expect = 1e-08
Identities = 28/29 (96%), Positives = 29/29 (100%)
Frame = +3
Query: 567 TSITKIDAQVRGGETRQDYKDTRRFPLES 653
TSITKIDAQVRGGETRQDYKDTRRFPLE+
Sbjct: 24 TSITKIDAQVRGGETRQDYKDTRRFPLEA 52
Score = 49.6 bits (113), Expect = 1e-04
Identities = 27/57 (47%), Positives = 30/57 (52%)
Frame = +1
Query: 643 PWKAPSCALLFRPCXLTGYLSAFLPSGNVCFLLIHSXXYVSQFRFRSLAPIWAXCTN 813
P +APSCALLFRPC L F FL+ H+ R RS AP WA CTN
Sbjct: 49 PLEAPSCALLFRPCRLPDTCPPFSLREAWRFLIAHAVGI--SVRCRSFAPSWAVCTN 103
Score = 44.4 bits (100), Expect = 0.004
Identities = 30/75 (40%), Positives = 34/75 (45%)
Frame = +2
Query: 500 SKRPGTVKRPRCWRFSIGSAPLXEHHKNRRSSQRWRNPTGL*RYQAFPPGKLPRALSCSD 679
SK+ T R RFSIGSAPL K + + FP + P
Sbjct: 2 SKKQSTGTSQRRCRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPL-EAPSCALLFR 60
Query: 680 PAXLPDTCPPFSLRE 724
P LPDTCPPFSLRE
Sbjct: 61 PCRLPDTCPPFSLRE 75
>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
Escherichia coli|Rep: Putative uncharacterized protein -
Escherichia coli
Length = 147
Score = 58.8 bits (136), Expect = 2e-07
Identities = 40/78 (51%), Positives = 44/78 (56%)
Frame = +2
Query: 332 RGEAVCVLGALPLPRSLTRCARSFGCGERYQLTQRR*YGYPQNQGITQERTCEQKASKRP 511
R +C G +PLPRSLTR ARSFGCGERY+LT G E T + SK
Sbjct: 26 RVSRICDTGDIPLPRSLTRYARSFGCGERYRLT--------DGDGNFLEDT-RKTLSKEE 76
Query: 512 GTVKRPRCWRFSIGSAPL 565
RPR RFSIGSAPL
Sbjct: 77 ---IRPRRSRFSIGSAPL 91
Score = 50.4 bits (115), Expect = 6e-05
Identities = 22/27 (81%), Positives = 23/27 (85%)
Frame = +3
Query: 567 TSITKIDAQVRGGETRQDYKDTRRFPL 647
TSI K DAQ+ GGETRQDYKD RRFPL
Sbjct: 92 TSIAKSDAQISGGETRQDYKDPRRFPL 118
>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
Myxococcus xanthus
Length = 486
Score = 58.0 bits (134), Expect = 3e-07
Identities = 32/57 (56%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Frame = +2
Query: 308 CINESANARGEAVCVLGALPLPRSLTRCARSFGCGERYQL-TQRR*YGYPQNQGITQ 475
CI + A AR EAV VL ALPL RS TRC RS GCG + R YG PQ QG+ Q
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQGMAQ 322
>UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular
organisms|Rep: Predicted protein - Nematostella
vectensis
Length = 97
Score = 54.8 bits (126), Expect = 3e-06
Identities = 24/27 (88%), Positives = 25/27 (92%)
Frame = +3
Query: 567 TSITKIDAQVRGGETRQDYKDTRRFPL 647
TSITK DAQ+ GGETRQDYKDTRRFPL
Sbjct: 60 TSITKSDAQISGGETRQDYKDTRRFPL 86
>UniRef50_UPI00015C640B Cluster: hypothetical protein
CKO_pCKO2p07168; n=1; Citrobacter koseri ATCC
BAA-895|Rep: hypothetical protein CKO_pCKO2p07168 -
Citrobacter koseri ATCC BAA-895
Length = 99
Score = 47.2 bits (107), Expect = 6e-04
Identities = 33/76 (43%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Frame = -2
Query: 834 SXRAERGVRAXSPDWSEXPKPELRYIXA*VN*EEA-HVSRREKGGQVSGKXAGSEQESAR 658
S RAERGVRA SP WSE PKP + V+ E+A + +K QVSGK G + +
Sbjct: 21 SSRAERGVRAYSPAWSERPKPSRD--TSSVSYEKAPRFPKGKKAEQVSGKRQGRNRRAHE 78
Query: 657 GSFPGGNAWYLYSPVG 610
G+ G + SPVG
Sbjct: 79 GA-AGEKSPASLSPVG 93
Score = 40.3 bits (90), Expect = 0.067
Identities = 17/31 (54%), Positives = 23/31 (74%)
Frame = -3
Query: 725 FPEGRKADRYPVSXQGRNRRAHEGAFQGETP 633
FP+G+KA++ QGRNRRAHEGA ++P
Sbjct: 56 FPKGKKAEQVSGKRQGRNRRAHEGAAGEKSP 86
>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
(SV40)
Length = 364
Score = 45.2 bits (102), Expect = 0.002
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +2
Query: 110 DPDMIRYIDEFGQTTTRMQ 166
DPDMIRYIDEFGQTTTRMQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364
>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
Alpha-hemolysin - Aeromonas hydrophila
Length = 59
Score = 44.4 bits (100), Expect = 0.004
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +1
Query: 427 HSKAVIRLSTESGDNAGKNM 486
HSKAVIRLSTESGDNAGKNM
Sbjct: 40 HSKAVIRLSTESGDNAGKNM 59
>UniRef50_P03845 Cluster: Putative uncharacterized protein 1; n=4;
Bacteria|Rep: Putative uncharacterized protein 1 -
Escherichia coli
Length = 42
Score = 41.9 bits (94), Expect = 0.022
Identities = 21/35 (60%), Positives = 22/35 (62%)
Frame = -2
Query: 876 LPGGXKTIVTGIRXSXRAERGVRAXSPDWSEXPKP 772
LPG + IR S RAERGVRA SP WSE P P
Sbjct: 7 LPGWTQDDSYRIRRSGRAERGVRAHSPAWSERPTP 41
>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
Magnoliophyta|Rep: Putative reverse transcriptase -
Zingiber officinale (Ginger)
Length = 49
Score = 41.1 bits (92), Expect = 0.038
Identities = 22/41 (53%), Positives = 26/41 (63%)
Frame = +3
Query: 234 INKLTTTIAFILCFRFRGEVWEVFSALMNRPTRGERRFAYW 356
+++LT L RF V +ALMNRPTRGERRFAYW
Sbjct: 1 MSELTHINCVALTARFPVGKPVVPAALMNRPTRGERRFAYW 41
>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
Enterobacteriaceae|Rep: Lactose operon repressor -
Escherichia coli (strain K12)
Length = 360
Score = 39.9 bits (89), Expect = 0.088
Identities = 19/24 (79%), Positives = 21/24 (87%)
Frame = -2
Query: 378 ERGSGRAPNTQTASPRALADSLMQ 307
+R + APNTQTASPRALADSLMQ
Sbjct: 325 KRKTTLAPNTQTASPRALADSLMQ 348
>UniRef50_P03846 Cluster: Putative uncharacterized protein 1; n=2;
cellular organisms|Rep: Putative uncharacterized protein
1 - Escherichia coli
Length = 47
Score = 37.9 bits (84), Expect = 0.36
Identities = 19/34 (55%), Positives = 20/34 (58%)
Frame = -2
Query: 873 PGGXKTIVTGIRXSXRAERGVRAXSPDWSEXPKP 772
PG + IR S RAERGV A SP WSE P P
Sbjct: 8 PGWTQVNSYRIRRSSRAERGVLAYSPAWSERPTP 41
>UniRef50_Q12GC2 Cluster: Putative uncharacterized protein
precursor; n=2; Polaromonas|Rep: Putative
uncharacterized protein precursor - Polaromonas sp.
(strain JS666 / ATCC BAA-500)
Length = 268
Score = 33.9 bits (74), Expect = 5.8
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Frame = -1
Query: 517 GSWPFAGLLLTCSFLRYP---LILWITVLPPLSELIPLAAAERP 395
G W +G L L++ LI+W+ LPPL++ IP+A+ + P
Sbjct: 158 GVWLSSGNALPWGLLQFGGMGLIVWLACLPPLADEIPMASGDSP 201
>UniRef50_A2SSD8 Cluster: Putative uncharacterized protein; n=1;
Methanocorpusculum labreanum Z|Rep: Putative
uncharacterized protein - Methanocorpusculum labreanum
(strain ATCC 43576 / DSM 4855 / Z)
Length = 109
Score = 33.9 bits (74), Expect = 5.8
Identities = 21/55 (38%), Positives = 28/55 (50%)
Frame = -1
Query: 268 KMNAIVVVNLFIAAYNGYK*SNSITNFTNKAFFSLHSSCGLSKLINVSYHVWIQL 104
+MNA V + FIAA + +T + AFF L S G ++VSY VW L
Sbjct: 27 RMNAWVDLAAFIAAV-----ATCVTGYVLWAFFPLGSGRGAMNFLDVSYQVWYDL 76
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 810,242,351
Number of Sequences: 1657284
Number of extensions: 15597489
Number of successful extensions: 40564
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 38763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40550
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 83211448033
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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