Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_D22
         (913 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.07c |||N alpha-acetyltransferase Nat2 |Schizosaccharomyc...    29   0.69 
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce...    26   6.5  
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    26   8.5  

>SPBC106.07c |||N alpha-acetyltransferase Nat2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 167

 Score = 29.5 bits (63), Expect = 0.69
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 675 PTLPAYRIPVRLSPFGKRVLPPNS 746
           PTLP Y +PVR S      +PP+S
Sbjct: 19  PTLPLYNVPVRRSISSSSSIPPSS 42


>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 481

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 660 VRSPVPTLPAYRIPVRLSPFGKRVLPPNSL 749
           V+ PVP     ++P+ +SPF   ++P   L
Sbjct: 369 VQKPVPKAFQPKVPMEISPFSGELVPATEL 398


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
 Frame = +2

Query: 563 LXEHHKNRRSSQRWRNPTGL*RYQAF----PPG 649
           L ++HKNR+S+     P GL  Y+A     PPG
Sbjct: 387 LQDYHKNRKSNFNKPGPDGLGLYKAVLLSGPPG 419


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,183,259
Number of Sequences: 5004
Number of extensions: 59186
Number of successful extensions: 157
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)