Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_D21
(902 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c... 36 0.008
SPBC14C8.15 |||triglyceride lipase-cholesterol esterase |Schizos... 28 1.6
SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos... 28 2.1
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 27 4.8
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 26 6.4
SPAC959.06c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 6.4
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|... 26 8.4
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 26 8.4
SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr ... 26 8.4
>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1142
Score = 35.9 bits (79), Expect = 0.008
Identities = 19/61 (31%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Frame = +3
Query: 336 SMWHQVLEIGLDVANISASHPEGINLIGYSQGGLVARG--IVETFSNVSVSTFISLSSPQ 509
S++ Q +I + N + P + L+G+S GG+VA+ ++ + + SV+T I+L++P
Sbjct: 235 SLYRQNRKISSEYDNEAFPPPTSVILLGHSMGGIVAQATFTMKNYVDGSVNTLITLATPH 294
Query: 510 A 512
A
Sbjct: 295 A 295
>SPBC14C8.15 |||triglyceride lipase-cholesterol esterase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 28.3 bits (60), Expect = 1.6
Identities = 24/98 (24%), Positives = 50/98 (51%), Gaps = 7/98 (7%)
Frame = +3
Query: 381 ISASHPEGINLIGYSQGGLVARGI--VETFSNVSVSTFISLSSPQAGQYGAGFLHLVFPG 554
+S + + I+L+G+SQG ++A ++T SV FI+L+ A + +G
Sbjct: 200 LSVNSFDSISLVGFSQGAILAFAALSIDTELRNSVRAFIALAPAIAPKKYSG-------R 252
Query: 555 LVKETVY---ELFYSKVGQHTSVGN--YWNDPYHQPLY 653
VK ++ +L Y G+++ +G+ +W + P++
Sbjct: 253 TVKSIIHANSQLLYLMFGRNSMLGSAVFWQAVLYPPVF 290
>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 721
Score = 27.9 bits (59), Expect = 2.1
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 788 GCDDVVVRSPDQHQPLQSQHVGFEFFRLLRL 696
G D + + P PL+S G+EFFR L+L
Sbjct: 56 GFDLDLPKRPPAKTPLESAEYGYEFFRRLQL 86
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 26.6 bits (56), Expect = 4.8
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -3
Query: 327 WTSSRTCSHCTQLFRDV 277
W SS HCT LFRDV
Sbjct: 349 WLSSLEQYHCTYLFRDV 365
>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 932
Score = 26.2 bits (55), Expect = 6.4
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 814 SSRIDCSXQGVMTSSSGPPISTSRFS 737
SSRID + +M+++ G P S +FS
Sbjct: 70 SSRIDANRASIMSATMGTPPSALKFS 95
>SPAC959.06c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 225
Score = 26.2 bits (55), Expect = 6.4
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Frame = +3
Query: 201 KPVVLMHGIMTGSGSME---IIKHRIEEKHPGTVVYNVNRFESWSSLESMWHQVLEIGLD 371
K VL H GS++ II + G VY ++ S+L S H + L
Sbjct: 28 KIAVLAHPYAFLGGSVDDINIIALSKKINSKGFTVYVLDATTRRSALLSGKHDTMIFTLF 87
Query: 372 VANI-SASHPEGINLIGYSQGGLVA 443
V I S +HPE + L GYS G ++
Sbjct: 88 VKYITSLNHPEYLLLGGYSYGARIS 112
>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 25.8 bits (54), Expect = 8.4
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -3
Query: 603 ADQLSSRTTHRQFL*PSPETPS 538
A +L T HRQ P+P TPS
Sbjct: 127 ATRLLQSTPHRQLFPPTPSTPS 148
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 25.8 bits (54), Expect = 8.4
Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
Frame = +3
Query: 219 HGIMTGSGSMEIIKHRIEEKHPG--TVVYNVNR--FESWSSLESMWHQVLEIGLDVA 377
HGIM G G + + G T+ Y + +W +E +WH L VA
Sbjct: 41 HGIMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVA 97
>SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 450
Score = 25.8 bits (54), Expect = 8.4
Identities = 13/49 (26%), Positives = 20/49 (40%)
Frame = +1
Query: 523 ELVSCTWCFRAWSKKLSMSCSTRKLVSTHPLAITGTTHTISRCTRPTAC 669
ELVSC+ C S+ L + C +K+ + T+ R C
Sbjct: 358 ELVSCSNCTDYQSRNLEIRCGVKKMGDREKKYVHCLNSTLCATERALCC 406
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,306,567
Number of Sequences: 5004
Number of extensions: 68230
Number of successful extensions: 209
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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