Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_D19
(985 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X70944-1|CAA50283.1| 707|Homo sapiens PTB-associated splicing f... 34 0.69
X57527-1|CAA40748.1| 744|Homo sapiens alpha 1(VIII) collagen pr... 34 0.69
BC051192-1|AAH51192.1| 707|Homo sapiens splicing factor proline... 34 0.69
BC027708-1|AAH27708.1| 525|Homo sapiens SFPQ protein protein. 34 0.69
BC004534-1|AAH04534.2| 634|Homo sapiens SFPQ protein protein. 34 0.69
AL590434-2|CAI12467.1| 707|Homo sapiens splicing factor proline... 34 0.69
AB037732-1|BAA92549.1| 889|Homo sapiens KIAA1311 protein protein. 34 0.69
BC038446-1|AAH38446.1| 673|Homo sapiens SF1 protein protein. 33 1.6
M20789-1|AAB59373.1| 589|Homo sapiens alpha-1 type I collagen p... 32 2.8
BT009917-1|AAP88919.1| 744|Homo sapiens collagen, type VIII, al... 32 2.8
BC013581-1|AAH13581.1| 744|Homo sapiens collagen, type VIII, al... 32 2.8
AY550974-1|AAT52220.1| 745|Homo sapiens cell proliferation-indu... 32 2.8
AF406780-1|AAN03620.1| 1626|Homo sapiens alpha 1 type XXII colla... 32 3.7
Z74615-1|CAA98968.1| 1464|Homo sapiens prepro-alpha1(I) collagen... 31 6.5
X98705-1|CAA67261.1| 1069|Homo sapiens collagen type I alpha 1 p... 31 6.5
X67337-1|CAA47752.1| 551|Homo sapiens Human pre-mRNA cleavage f... 31 6.5
X67336-1|CAA47751.1| 551|Homo sapiens HPBRII-7 protein. 31 6.5
X16711-1|CAA34683.1| 1160|Homo sapiens COL2A1 protein. 31 6.5
X16468-1|CAA34488.1| 1418|Homo sapiens protein ( Human mRNA for ... 31 6.5
X07884-1|CAA30731.1| 472|Homo sapiens protein ( Human mRNA for ... 31 6.5
M36546-1|AAA60150.1| 472|Homo sapiens COL1A1 protein. 31 6.5
L10347-1|AAC41772.1| 1487|Homo sapiens alpha-1 type II collagen ... 31 6.5
BC116449-1|AAI16450.1| 1487|Homo sapiens collagen, type II, alph... 31 6.5
BC036531-1|AAH36531.1| 1464|Homo sapiens collagen, type I, alpha... 31 6.5
BC005000-1|AAH05000.1| 478|Homo sapiens CPSF6 protein protein. 31 6.5
BC000714-1|AAH00714.1| 588|Homo sapiens CPSF6 protein protein. 31 6.5
AK223568-1|BAD97288.1| 551|Homo sapiens cleavage and polyadenyl... 31 6.5
AF017178-1|AAB94054.2| 1461|Homo sapiens pro alpha 1(I) collagen... 31 6.5
AB209597-1|BAD92834.1| 1467|Homo sapiens Collagen alpha 1 chain ... 31 6.5
BC023532-1|AAH23532.1| 641|Homo sapiens WW domain binding prote... 31 8.5
BC016441-1|AAH16441.2| 400|Homo sapiens WBP11 protein protein. 31 8.5
BC001621-1|AAH01621.1| 641|Homo sapiens WW domain binding prote... 31 8.5
AF118023-1|AAD30425.1| 641|Homo sapiens SH3 domain-binding prot... 31 8.5
AB029309-1|BAA88410.1| 641|Homo sapiens Npw38-binding protein N... 31 8.5
>X70944-1|CAA50283.1| 707|Homo sapiens PTB-associated splicing
factor protein.
Length = 707
Score = 34.3 bits (75), Expect = 0.69
Identities = 24/80 (30%), Positives = 26/80 (32%), Gaps = 1/80 (1%)
Frame = +3
Query: 537 PXXXXGPRPPXXGXRRGAXTPIXPPAPXXXGLPXTXXAAXPTXGEPXXPDXDXXPXP-XA 713
P GP P A PP P G+P T A G P P P P
Sbjct: 143 PGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQA---GGPPPPPAAVPGPGPGPK 199
Query: 714 XXXXPXRPRGXHXPRXPXPG 773
P P+G P P PG
Sbjct: 200 QGPGPGGPKGGKMPGGPKPG 219
>X57527-1|CAA40748.1| 744|Homo sapiens alpha 1(VIII) collagen
protein.
Length = 744
Score = 34.3 bits (75), Expect = 0.69
Identities = 22/73 (30%), Positives = 25/73 (34%)
Frame = -1
Query: 772 PGXGXRGXCXPRGRXGXXXXAXGXGXXSXSGXXGSPXVGXAAXXVXGRPXXXGAGGXMGV 593
PG G G P+G G G G GSP +G + G P G G MG
Sbjct: 348 PGIGKPGFPGPKGDRGMGGVPGALGPRGEKGPIGSPGIGGS----PGEPGLPGIPGPMGP 403
Query: 592 XAPRRXPXXGGRG 554
P G G
Sbjct: 404 PGAIGFPGPKGEG 416
>BC051192-1|AAH51192.1| 707|Homo sapiens splicing factor
proline/glutamine-rich (polypyrimidine tract binding
protein as protein.
Length = 707
Score = 34.3 bits (75), Expect = 0.69
Identities = 24/80 (30%), Positives = 26/80 (32%), Gaps = 1/80 (1%)
Frame = +3
Query: 537 PXXXXGPRPPXXGXRRGAXTPIXPPAPXXXGLPXTXXAAXPTXGEPXXPDXDXXPXP-XA 713
P GP P A PP P G+P T A G P P P P
Sbjct: 143 PGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQA---GGPPPPPAAVPGPGPGPK 199
Query: 714 XXXXPXRPRGXHXPRXPXPG 773
P P+G P P PG
Sbjct: 200 QGPGPGGPKGGKMPGGPKPG 219
>BC027708-1|AAH27708.1| 525|Homo sapiens SFPQ protein protein.
Length = 525
Score = 34.3 bits (75), Expect = 0.69
Identities = 24/80 (30%), Positives = 26/80 (32%), Gaps = 1/80 (1%)
Frame = +3
Query: 537 PXXXXGPRPPXXGXRRGAXTPIXPPAPXXXGLPXTXXAAXPTXGEPXXPDXDXXPXP-XA 713
P GP P A PP P G+P T A G P P P P
Sbjct: 143 PGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQA---GGPPPPPAAVPGPGPGPK 199
Query: 714 XXXXPXRPRGXHXPRXPXPG 773
P P+G P P PG
Sbjct: 200 QGPGPGGPKGGKMPGGPKPG 219
>BC004534-1|AAH04534.2| 634|Homo sapiens SFPQ protein protein.
Length = 634
Score = 34.3 bits (75), Expect = 0.69
Identities = 24/80 (30%), Positives = 26/80 (32%), Gaps = 1/80 (1%)
Frame = +3
Query: 537 PXXXXGPRPPXXGXRRGAXTPIXPPAPXXXGLPXTXXAAXPTXGEPXXPDXDXXPXP-XA 713
P GP P A PP P G+P T A G P P P P
Sbjct: 70 PGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQA---GGPPPPPAAVPGPGPGPK 126
Query: 714 XXXXPXRPRGXHXPRXPXPG 773
P P+G P P PG
Sbjct: 127 QGPGPGGPKGGKMPGGPKPG 146
>AL590434-2|CAI12467.1| 707|Homo sapiens splicing factor
proline/glutamine-rich (polypyrimidine tract binding
protein as protein.
Length = 707
Score = 34.3 bits (75), Expect = 0.69
Identities = 24/80 (30%), Positives = 26/80 (32%), Gaps = 1/80 (1%)
Frame = +3
Query: 537 PXXXXGPRPPXXGXRRGAXTPIXPPAPXXXGLPXTXXAAXPTXGEPXXPDXDXXPXP-XA 713
P GP P A PP P G+P T A G P P P P
Sbjct: 143 PGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQA---GGPPPPPAAVPGPGPGPK 199
Query: 714 XXXXPXRPRGXHXPRXPXPG 773
P P+G P P PG
Sbjct: 200 QGPGPGGPKGGKMPGGPKPG 219
>AB037732-1|BAA92549.1| 889|Homo sapiens KIAA1311 protein protein.
Length = 889
Score = 34.3 bits (75), Expect = 0.69
Identities = 15/38 (39%), Positives = 15/38 (39%)
Frame = +2
Query: 605 PPGPXXPGPPXHSXXRXPXXGXTPXPGPGXXTXXGXXP 718
PP P P PP P G P PGPG G P
Sbjct: 147 PPPPGLPPPPPPGMLMPPMPGPGPGPGPGPGPGPGPGP 184
Score = 32.3 bits (70), Expect = 2.8
Identities = 15/38 (39%), Positives = 15/38 (39%)
Frame = +2
Query: 605 PPGPXXPGPPXHSXXRXPXXGXTPXPGPGXXTXXGXXP 718
PPG P PP P G P PGPG G P
Sbjct: 149 PPGLPPPPPPGMLMPPMPGPGPGPGPGPGPGPGPGPGP 186
>BC038446-1|AAH38446.1| 673|Homo sapiens SF1 protein protein.
Length = 673
Score = 33.1 bits (72), Expect = 1.6
Identities = 24/77 (31%), Positives = 25/77 (32%), Gaps = 2/77 (2%)
Frame = +3
Query: 552 GPRPPXXGXRRGAXTPIXPPAPXXXGLPXTXXAAXPTXGEPXXPDXDXXPXP--XAXXXX 725
GP PP G G P PP P G AA P P P P P
Sbjct: 31 GP-PPAPGPGAGLLAP-GPPPPPPVGSMGALTAAFPFAALPPPPPPPPPPPPQQPPPPPP 88
Query: 726 PXRPRGXHXPRXPXPGP 776
P P + P P P P
Sbjct: 89 PPSPGASYPPPQPPPPP 105
>M20789-1|AAB59373.1| 589|Homo sapiens alpha-1 type I collagen
protein.
Length = 589
Score = 32.3 bits (70), Expect = 2.8
Identities = 27/80 (33%), Positives = 28/80 (35%), Gaps = 1/80 (1%)
Frame = -1
Query: 772 PGX-GXRGXCXPRGRXGXXXXAXGXGXXSXSGXXGSPXVGXAAXXVXGRPXXXGAGGXMG 596
PG G RG RGR G A G +G G P A G P GA G G
Sbjct: 298 PGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGP-PGFPGAVGAKGEAG 356
Query: 595 VXAPRRXPXXGGRGPXXXFG 536
PR G GP G
Sbjct: 357 PQGPR-----GSEGPQGVLG 371
>BT009917-1|AAP88919.1| 744|Homo sapiens collagen, type VIII, alpha
1 protein.
Length = 744
Score = 32.3 bits (70), Expect = 2.8
Identities = 21/73 (28%), Positives = 24/73 (32%)
Frame = -1
Query: 772 PGXGXRGXCXPRGRXGXXXXAXGXGXXSXSGXXGSPXVGXAAXXVXGRPXXXGAGGXMGV 593
PG G G P+G G G G G+P +G G P G G MG
Sbjct: 348 PGIGKPGFPGPKGDRGMGGVPGALGPRGEKGPIGAPGIGGP----PGEPGLPGIPGPMGP 403
Query: 592 XAPRRXPXXGGRG 554
P G G
Sbjct: 404 PGAIGFPGPKGEG 416
>BC013581-1|AAH13581.1| 744|Homo sapiens collagen, type VIII, alpha
1 protein.
Length = 744
Score = 32.3 bits (70), Expect = 2.8
Identities = 21/73 (28%), Positives = 24/73 (32%)
Frame = -1
Query: 772 PGXGXRGXCXPRGRXGXXXXAXGXGXXSXSGXXGSPXVGXAAXXVXGRPXXXGAGGXMGV 593
PG G G P+G G G G G+P +G G P G G MG
Sbjct: 348 PGIGKPGFPGPKGDRGMGGVPGALGPRGEKGPIGAPGIGGP----PGEPGLPGIPGPMGP 403
Query: 592 XAPRRXPXXGGRG 554
P G G
Sbjct: 404 PGAIGFPGPKGEG 416
>AY550974-1|AAT52220.1| 745|Homo sapiens cell
proliferation-inducing protein 41 protein.
Length = 745
Score = 32.3 bits (70), Expect = 2.8
Identities = 21/73 (28%), Positives = 24/73 (32%)
Frame = -1
Query: 772 PGXGXRGXCXPRGRXGXXXXAXGXGXXSXSGXXGSPXVGXAAXXVXGRPXXXGAGGXMGV 593
PG G G P+G G G G G+P +G G P G G MG
Sbjct: 349 PGIGKPGFPGPKGDRGMGGVPGALGPRGEKGPIGAPGIGGP----PGEPGLPGIPGPMGP 404
Query: 592 XAPRRXPXXGGRG 554
P G G
Sbjct: 405 PGAIGFPGPKGEG 417
>AF406780-1|AAN03620.1| 1626|Homo sapiens alpha 1 type XXII collagen
protein.
Length = 1626
Score = 31.9 bits (69), Expect = 3.7
Identities = 35/123 (28%), Positives = 38/123 (30%), Gaps = 3/123 (2%)
Frame = -1
Query: 763 GXRGXCXPRGRXGXXXXAXGXGXXSXSGXXGSPXVGXAAXXVXGRPXXXGAGGXMGVXAP 584
G G +GR G A G G G P V + G GA G G
Sbjct: 611 GKPGDTGQQGRPGPSGVAGPQGEKGDVGPAGPPGVPGSVVQQEGLKGEQGAPGPRGHQGA 670
Query: 583 RRXPXXGGRGPXXXFG-XSXSXLCHXXXXWXTASPPW-XGLIPLAXAAG-PRAXXPXGPG 413
P G RGP G L PP GL+ L G P P GPG
Sbjct: 671 PGPP--GARGPIGPEGRDGPPGLQGLRGKKGDMGPPGIPGLLGLQGPPGPPGVPGPPGPG 728
Query: 412 XRP 404
P
Sbjct: 729 GSP 731
>Z74615-1|CAA98968.1| 1464|Homo sapiens prepro-alpha1(I) collagen
protein.
Length = 1464
Score = 31.1 bits (67), Expect = 6.5
Identities = 23/65 (35%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
Frame = -1
Query: 772 PGX-GXRGXCXPRGRXGXXXXAXGXGXXSXSGXXGSPXVGXAAXXVXGRPXXXGAGGXMG 596
PG G RG RGR G A G +G G P A G P GA G G
Sbjct: 298 PGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGP-PGFPGAVGAKGEAG 356
Query: 595 VXAPR 581
PR
Sbjct: 357 PQGPR 361
>X98705-1|CAA67261.1| 1069|Homo sapiens collagen type I alpha 1
protein.
Length = 1069
Score = 31.1 bits (67), Expect = 6.5
Identities = 23/65 (35%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
Frame = -1
Query: 772 PGX-GXRGXCXPRGRXGXXXXAXGXGXXSXSGXXGSPXVGXAAXXVXGRPXXXGAGGXMG 596
PG G RG RGR G A G +G G P A G P GA G G
Sbjct: 298 PGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGP-PGFPGAVGAKGEAG 356
Query: 595 VXAPR 581
PR
Sbjct: 357 PQGPR 361
>X67337-1|CAA47752.1| 551|Homo sapiens Human pre-mRNA cleavage
factor I 68 kDa subunit protein.
Length = 551
Score = 31.1 bits (67), Expect = 6.5
Identities = 15/45 (33%), Positives = 15/45 (33%)
Frame = +2
Query: 605 PPGPXXPGPPXHSXXRXPXXGXTPXPGPGXXTXXGXXPXXAAPPP 739
PP PG P P P P PG G P PPP
Sbjct: 274 PPPVLFPGQPFGQPPLGPLPPGPPPPVPGYGPPPGPPPPQQGPPP 318
>X67336-1|CAA47751.1| 551|Homo sapiens HPBRII-7 protein.
Length = 551
Score = 31.1 bits (67), Expect = 6.5
Identities = 15/45 (33%), Positives = 15/45 (33%)
Frame = +2
Query: 605 PPGPXXPGPPXHSXXRXPXXGXTPXPGPGXXTXXGXXPXXAAPPP 739
PP PG P P P P PG G P PPP
Sbjct: 274 PPPVLFPGQPFGQPPLGPLPPGPPPPVPGYGPPPGPPPPQQGPPP 318
>X16711-1|CAA34683.1| 1160|Homo sapiens COL2A1 protein.
Length = 1160
Score = 31.1 bits (67), Expect = 6.5
Identities = 41/130 (31%), Positives = 46/130 (35%), Gaps = 6/130 (4%)
Frame = -1
Query: 772 PGX-GXRGXCXPRGRXGXXXXAXGXGXXSXSGXXGSP-XVGXAAXXVXGRPXXXGAGGXM 599
PG G RG RGR G A G G G P VG A G P GA G
Sbjct: 251 PGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPA-----GGPGFPGAPGAK 305
Query: 598 GVXAP--RRXPXXGGRGPXXXFGXSXSXLCHXXXXWXTASPPWXGLIPLAXAAGPR--AX 431
G P R P G +GP G S + +P G+ +AG A
Sbjct: 306 GEAGPTGARGP-EGAQGPRGEPGTPGS----PGPAGASGNPGTDGIPGAKGSAGAPGIAG 360
Query: 430 XPXGPGXRPP 401
P PG R P
Sbjct: 361 APGFPGPRGP 370
>X16468-1|CAA34488.1| 1418|Homo sapiens protein ( Human mRNA for
alpha-1 type II collagen. ).
Length = 1418
Score = 31.1 bits (67), Expect = 6.5
Identities = 41/130 (31%), Positives = 46/130 (35%), Gaps = 6/130 (4%)
Frame = -1
Query: 772 PGX-GXRGXCXPRGRXGXXXXAXGXGXXSXSGXXGSP-XVGXAAXXVXGRPXXXGAGGXM 599
PG G RG RGR G A G G G P VG A G P GA G
Sbjct: 251 PGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPA-----GGPGFPGAPGAK 305
Query: 598 GVXAP--RRXPXXGGRGPXXXFGXSXSXLCHXXXXWXTASPPWXGLIPLAXAAGPR--AX 431
G P R P G +GP G S + +P G+ +AG A
Sbjct: 306 GEAGPTGARGP-EGAQGPRGEPGTPGS----PGPAGASGNPGTDGIPGAKGSAGAPGIAG 360
Query: 430 XPXGPGXRPP 401
P PG R P
Sbjct: 361 APGFPGPRGP 370
>X07884-1|CAA30731.1| 472|Homo sapiens protein ( Human mRNA for
alpha-1(I) chain of procollagen type I. ).
Length = 472
Score = 31.1 bits (67), Expect = 6.5
Identities = 23/65 (35%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
Frame = -1
Query: 772 PGX-GXRGXCXPRGRXGXXXXAXGXGXXSXSGXXGSPXVGXAAXXVXGRPXXXGAGGXMG 596
PG G RG RGR G A G +G G P A G P GA G G
Sbjct: 298 PGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGP-PGFPGAVGAKGEAG 356
Query: 595 VXAPR 581
PR
Sbjct: 357 PQGPR 361
>M36546-1|AAA60150.1| 472|Homo sapiens COL1A1 protein.
Length = 472
Score = 31.1 bits (67), Expect = 6.5
Identities = 23/65 (35%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
Frame = -1
Query: 772 PGX-GXRGXCXPRGRXGXXXXAXGXGXXSXSGXXGSPXVGXAAXXVXGRPXXXGAGGXMG 596
PG G RG RGR G A G +G G P A G P GA G G
Sbjct: 298 PGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGP-PGFPGAVGAKGEAG 356
Query: 595 VXAPR 581
PR
Sbjct: 357 PQGPR 361
>L10347-1|AAC41772.1| 1487|Homo sapiens alpha-1 type II collagen
protein.
Length = 1487
Score = 31.1 bits (67), Expect = 6.5
Identities = 41/130 (31%), Positives = 46/130 (35%), Gaps = 6/130 (4%)
Frame = -1
Query: 772 PGX-GXRGXCXPRGRXGXXXXAXGXGXXSXSGXXGSP-XVGXAAXXVXGRPXXXGAGGXM 599
PG G RG RGR G A G G G P VG A G P GA G
Sbjct: 320 PGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPA-----GGPGFPGAPGAK 374
Query: 598 GVXAP--RRXPXXGGRGPXXXFGXSXSXLCHXXXXWXTASPPWXGLIPLAXAAGPR--AX 431
G P R P G +GP G S + +P G+ +AG A
Sbjct: 375 GEAGPTGARGP-EGAQGPRGEPGTPGS----PGPAGASGNPGTDGIPGAKGSAGAPGIAG 429
Query: 430 XPXGPGXRPP 401
P PG R P
Sbjct: 430 APGFPGPRGP 439
>BC116449-1|AAI16450.1| 1487|Homo sapiens collagen, type II, alpha 1
(primary osteoarthritis, spondyloepiphyseal dysplasi
protein.
Length = 1487
Score = 31.1 bits (67), Expect = 6.5
Identities = 41/130 (31%), Positives = 46/130 (35%), Gaps = 6/130 (4%)
Frame = -1
Query: 772 PGX-GXRGXCXPRGRXGXXXXAXGXGXXSXSGXXGSP-XVGXAAXXVXGRPXXXGAGGXM 599
PG G RG RGR G A G G G P VG A G P GA G
Sbjct: 320 PGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPA-----GGPGFPGAPGAK 374
Query: 598 GVXAP--RRXPXXGGRGPXXXFGXSXSXLCHXXXXWXTASPPWXGLIPLAXAAGPR--AX 431
G P R P G +GP G S + +P G+ +AG A
Sbjct: 375 GEAGPTGARGP-EGAQGPRGEPGTPGS----PGPAGASGNPGTDGIPGAKGSAGAPGIAG 429
Query: 430 XPXGPGXRPP 401
P PG R P
Sbjct: 430 APGFPGPRGP 439
>BC036531-1|AAH36531.1| 1464|Homo sapiens collagen, type I, alpha 1
protein.
Length = 1464
Score = 31.1 bits (67), Expect = 6.5
Identities = 23/65 (35%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
Frame = -1
Query: 772 PGX-GXRGXCXPRGRXGXXXXAXGXGXXSXSGXXGSPXVGXAAXXVXGRPXXXGAGGXMG 596
PG G RG RGR G A G +G G P A G P GA G G
Sbjct: 298 PGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGP-PGFPGAVGAKGEAG 356
Query: 595 VXAPR 581
PR
Sbjct: 357 PQGPR 361
>BC005000-1|AAH05000.1| 478|Homo sapiens CPSF6 protein protein.
Length = 478
Score = 31.1 bits (67), Expect = 6.5
Identities = 15/45 (33%), Positives = 15/45 (33%)
Frame = +2
Query: 605 PPGPXXPGPPXHSXXRXPXXGXTPXPGPGXXTXXGXXPXXAAPPP 739
PP PG P P P P PG G P PPP
Sbjct: 201 PPPVLFPGQPFGQPPLGPLPPGPPPPVPGYGPPPGPPPPQQGPPP 245
>BC000714-1|AAH00714.1| 588|Homo sapiens CPSF6 protein protein.
Length = 588
Score = 31.1 bits (67), Expect = 6.5
Identities = 15/45 (33%), Positives = 15/45 (33%)
Frame = +2
Query: 605 PPGPXXPGPPXHSXXRXPXXGXTPXPGPGXXTXXGXXPXXAAPPP 739
PP PG P P P P PG G P PPP
Sbjct: 311 PPPVLFPGQPFGQPPLGPLPPGPPPPVPGYGPPPGPPPPQQGPPP 355
>AK223568-1|BAD97288.1| 551|Homo sapiens cleavage and
polyadenylation specific factor 6, 68 kD subunit variant
protein.
Length = 551
Score = 31.1 bits (67), Expect = 6.5
Identities = 15/45 (33%), Positives = 15/45 (33%)
Frame = +2
Query: 605 PPGPXXPGPPXHSXXRXPXXGXTPXPGPGXXTXXGXXPXXAAPPP 739
PP PG P P P P PG G P PPP
Sbjct: 274 PPPVLFPGQPFGQPPLGPLPPGPPPPVPGYGPPPGPPPPQQGPPP 318
>AF017178-1|AAB94054.2| 1461|Homo sapiens pro alpha 1(I) collagen
protein.
Length = 1461
Score = 31.1 bits (67), Expect = 6.5
Identities = 23/65 (35%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
Frame = -1
Query: 772 PGX-GXRGXCXPRGRXGXXXXAXGXGXXSXSGXXGSPXVGXAAXXVXGRPXXXGAGGXMG 596
PG G RG RGR G A G +G G P A G P GA G G
Sbjct: 295 PGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGP-PGFPGAVGAKGEAG 353
Query: 595 VXAPR 581
PR
Sbjct: 354 PQGPR 358
>AB209597-1|BAD92834.1| 1467|Homo sapiens Collagen alpha 1 chain
precursor variant protein.
Length = 1467
Score = 31.1 bits (67), Expect = 6.5
Identities = 23/65 (35%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
Frame = -1
Query: 772 PGX-GXRGXCXPRGRXGXXXXAXGXGXXSXSGXXGSPXVGXAAXXVXGRPXXXGAGGXMG 596
PG G RG RGR G A G +G G P A G P GA G G
Sbjct: 301 PGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGP-PGFPGAVGAKGEAG 359
Query: 595 VXAPR 581
PR
Sbjct: 360 PQGPR 364
>BC023532-1|AAH23532.1| 641|Homo sapiens WW domain binding protein
11 protein.
Length = 641
Score = 30.7 bits (66), Expect = 8.5
Identities = 21/75 (28%), Positives = 22/75 (29%), Gaps = 2/75 (2%)
Frame = +3
Query: 558 RPPXXGXRRGAXTPIXPPAPXXXGLPXTXXAAXP--TXGEPXXPDXDXXPXPXAXXXXPX 731
RPP RG + PP P P P G P P P P
Sbjct: 443 RPPGMPGLRGPLPRLLPPGPPPGRPPGPPPGPPPGLPPGPPPRGPPPRLPPPAPPGIPPP 502
Query: 732 RPRGXHXPRXPXPGP 776
RP P P GP
Sbjct: 503 RPGMMRPPLVPPLGP 517
>BC016441-1|AAH16441.2| 400|Homo sapiens WBP11 protein protein.
Length = 400
Score = 30.7 bits (66), Expect = 8.5
Identities = 21/75 (28%), Positives = 22/75 (29%), Gaps = 2/75 (2%)
Frame = +3
Query: 558 RPPXXGXRRGAXTPIXPPAPXXXGLPXTXXAAXP--TXGEPXXPDXDXXPXPXAXXXXPX 731
RPP RG + PP P P P G P P P P
Sbjct: 202 RPPGMPGLRGPLPRLLPPGPPPGRPPGPPPGPPPGLPPGPPPRGPPPRLPPPAPPGIPPP 261
Query: 732 RPRGXHXPRXPXPGP 776
RP P P GP
Sbjct: 262 RPGMMRPPLVPPLGP 276
>BC001621-1|AAH01621.1| 641|Homo sapiens WW domain binding protein
11 protein.
Length = 641
Score = 30.7 bits (66), Expect = 8.5
Identities = 21/75 (28%), Positives = 22/75 (29%), Gaps = 2/75 (2%)
Frame = +3
Query: 558 RPPXXGXRRGAXTPIXPPAPXXXGLPXTXXAAXP--TXGEPXXPDXDXXPXPXAXXXXPX 731
RPP RG + PP P P P G P P P P
Sbjct: 443 RPPGMPGLRGPLPRLLPPGPPPGRPPGPPPGPPPGLPPGPPPRGPPPRLPPPAPPGIPPP 502
Query: 732 RPRGXHXPRXPXPGP 776
RP P P GP
Sbjct: 503 RPGMMRPPLVPPLGP 517
>AF118023-1|AAD30425.1| 641|Homo sapiens SH3 domain-binding protein
SNP70 protein.
Length = 641
Score = 30.7 bits (66), Expect = 8.5
Identities = 21/75 (28%), Positives = 22/75 (29%), Gaps = 2/75 (2%)
Frame = +3
Query: 558 RPPXXGXRRGAXTPIXPPAPXXXGLPXTXXAAXP--TXGEPXXPDXDXXPXPXAXXXXPX 731
RPP RG + PP P P P G P P P P
Sbjct: 443 RPPGMPGLRGPLPRLLPPGPPPGRPPGPPPGPPPGLPPGPPPRGPPPRLPPPAPPGIPPP 502
Query: 732 RPRGXHXPRXPXPGP 776
RP P P GP
Sbjct: 503 RPGMMRPPLVPPLGP 517
>AB029309-1|BAA88410.1| 641|Homo sapiens Npw38-binding protein
NpwBP protein.
Length = 641
Score = 30.7 bits (66), Expect = 8.5
Identities = 21/75 (28%), Positives = 22/75 (29%), Gaps = 2/75 (2%)
Frame = +3
Query: 558 RPPXXGXRRGAXTPIXPPAPXXXGLPXTXXAAXP--TXGEPXXPDXDXXPXPXAXXXXPX 731
RPP RG + PP P P P G P P P P
Sbjct: 443 RPPGMPGLRGPLPRLLPPGPPPGRPPGPPPGPPPGLPPGPPPRGPPPRLPPPAPPGIPPP 502
Query: 732 RPRGXHXPRXPXPGP 776
RP P P GP
Sbjct: 503 RPGMMRPPLVPPLGP 517
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,278,544
Number of Sequences: 237096
Number of extensions: 1512143
Number of successful extensions: 6643
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 3393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6028
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 13158340014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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