Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_D19
(985 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF022985-9|AAB69960.1| 314|Caenorhabditis elegans Collagen prot... 33 0.41
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 32 0.54
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 32 0.54
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 32 0.54
AF067607-9|AAF98609.1| 460|Caenorhabditis elegans Collagen prot... 32 0.72
Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical pr... 31 0.95
AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen pro... 31 1.3
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 31 1.7
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 31 1.7
AL132864-1|CAB63392.1| 613|Caenorhabditis elegans Hypothetical ... 31 1.7
U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protei... 27 2.2
AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen prot... 27 2.2
Z70756-6|CAA94792.1| 290|Caenorhabditis elegans Hypothetical pr... 30 2.9
Z70756-4|CAA94788.1| 290|Caenorhabditis elegans Hypothetical pr... 30 2.9
U50312-9|AAA92325.1| 294|Caenorhabditis elegans Collagen protei... 30 2.9
U50312-7|AAA92323.2| 306|Caenorhabditis elegans Collagen protei... 30 2.9
Z74036-2|CAA98487.1| 266|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z74036-1|CAA98486.1| 299|Caenorhabditis elegans Hypothetical pr... 29 3.8
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 29 3.8
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 5.1
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 5.1
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 5.1
AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen prot... 29 5.1
Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical pr... 29 6.7
AL032632-7|CAA21586.1| 313|Caenorhabditis elegans Hypothetical ... 29 6.7
Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical pr... 28 8.9
Z54238-5|CAA90997.1| 299|Caenorhabditis elegans Hypothetical pr... 28 8.9
Z54238-3|CAA90995.1| 299|Caenorhabditis elegans Hypothetical pr... 28 8.9
U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter... 28 8.9
AY347576-1|AAP97870.1| 299|Caenorhabditis elegans COLlagen stru... 28 8.9
AY347574-1|AAP97868.1| 299|Caenorhabditis elegans COLlagen stru... 28 8.9
AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ... 28 8.9
AF047656-13|AAC05105.1| 313|Caenorhabditis elegans Collagen pro... 28 8.9
>AF022985-9|AAB69960.1| 314|Caenorhabditis elegans Collagen protein
141 protein.
Length = 314
Score = 32.7 bits (71), Expect = 0.41
Identities = 24/70 (34%), Positives = 25/70 (35%)
Frame = -1
Query: 769 GXGXRGXCXPRGRXGXXXXAXGXGXXSXSGXXGSPXVGXAAXXVXGRPXXXGAGGXMGVX 590
G RG P GR G A G G SG G+P A G P G G G
Sbjct: 204 GQRSRGLPGPSGRPGPQGPAGGPGQPGQSGGSGTPG-QPGAPGAPGHPGQAGTPGTPG-- 260
Query: 589 APRRXPXXGG 560
AP GG
Sbjct: 261 APGNSGAPGG 270
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 32.3 bits (70), Expect = 0.54
Identities = 24/83 (28%), Positives = 26/83 (31%), Gaps = 3/83 (3%)
Frame = +3
Query: 537 PXXXXGPRPPXXGXR--RGAXTPIXPPAPXXXGLPXTXXAAXPTXGEPXXPD-XDXXPXP 707
P P PP G G+ +P PPA P T P G P P P P
Sbjct: 233 PAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPP 292
Query: 708 XAXXXXPXRPRGXHXPRXPXPGP 776
A P P P P P
Sbjct: 293 RAGSPPPPPPPRGSPPTGSLPPP 315
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 32.3 bits (70), Expect = 0.54
Identities = 24/83 (28%), Positives = 26/83 (31%), Gaps = 3/83 (3%)
Frame = +3
Query: 537 PXXXXGPRPPXXGXR--RGAXTPIXPPAPXXXGLPXTXXAAXPTXGEPXXPD-XDXXPXP 707
P P PP G G+ +P PPA P T P G P P P P
Sbjct: 254 PAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPP 313
Query: 708 XAXXXXPXRPRGXHXPRXPXPGP 776
A P P P P P
Sbjct: 314 RAGSPPPPPPPRGSPPTGSLPPP 336
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 32.3 bits (70), Expect = 0.54
Identities = 24/83 (28%), Positives = 26/83 (31%), Gaps = 3/83 (3%)
Frame = +3
Query: 537 PXXXXGPRPPXXGXR--RGAXTPIXPPAPXXXGLPXTXXAAXPTXGEPXXPD-XDXXPXP 707
P P PP G G+ +P PPA P T P G P P P P
Sbjct: 239 PAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPP 298
Query: 708 XAXXXXPXRPRGXHXPRXPXPGP 776
A P P P P P
Sbjct: 299 RAGSPPPPPPPRGSPPTGSLPPP 321
>AF067607-9|AAF98609.1| 460|Caenorhabditis elegans Collagen protein
102 protein.
Length = 460
Score = 31.9 bits (69), Expect = 0.72
Identities = 18/57 (31%), Positives = 20/57 (35%)
Frame = -1
Query: 775 GPGXGXRGXCXPRGRXGXXXXAXGXGXXSXSGXXGSPXVGXAAXXVXGRPXXXGAGG 605
G G G G P G G A G +G G+P A R GAGG
Sbjct: 229 GSGPGPEGPAGPPGPNGKDGEAGAPGKDGDAGADGAPGTDAAYCPCPPRSAALGAGG 285
>Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical
protein F54B11.2 protein.
Length = 304
Score = 31.5 bits (68), Expect = 0.95
Identities = 18/50 (36%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Frame = +2
Query: 596 AHXPPGPXXPGPPXHSXXRXPXX--GXTPXPGPGXXTXXGXXPXXAAPPP 739
A P P PGPP S P G PGP P AAP P
Sbjct: 177 AGSPAAPSPPGPPGPSGPAGPAGNDGAAGTPGPDGPAGESTYPEPAAPGP 226
>AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen
protein 142 protein.
Length = 325
Score = 31.1 bits (67), Expect = 1.3
Identities = 24/70 (34%), Positives = 25/70 (35%)
Frame = -1
Query: 769 GXGXRGXCXPRGRXGXXXXAXGXGXXSXSGXXGSPXVGXAAXXVXGRPXXXGAGGXMGVX 590
G RG P GR G A G G SG GSP G+P G G G
Sbjct: 197 GQRSRGLPGPSGRPGPPGPAGGPGQPGHSGGAGSPG-PQGPPGPSGQPGHSGNDGVPG-- 253
Query: 589 APRRXPXXGG 560
AP GG
Sbjct: 254 APGNPGSPGG 263
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 30.7 bits (66), Expect = 1.7
Identities = 18/46 (39%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Frame = +2
Query: 605 PPG-PXXPGPPXHSXXRXPXXGXTPXPGPGXXTXXGXXPXXAAPPP 739
PPG P P PP S P G P P P G P PPP
Sbjct: 310 PPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMP--PPPPP 353
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 30.7 bits (66), Expect = 1.7
Identities = 18/46 (39%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Frame = +2
Query: 605 PPG-PXXPGPPXHSXXRXPXXGXTPXPGPGXXTXXGXXPXXAAPPP 739
PPG P P PP S P G P P P G P PPP
Sbjct: 320 PPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMP--PPPPP 363
>AL132864-1|CAB63392.1| 613|Caenorhabditis elegans Hypothetical
protein Y53H1A.1 protein.
Length = 613
Score = 30.7 bits (66), Expect = 1.7
Identities = 14/38 (36%), Positives = 15/38 (39%)
Frame = +2
Query: 605 PPGPXXPGPPXHSXXRXPXXGXTPXPGPGXXTXXGXXP 718
PPGP P P + P G P P G T G P
Sbjct: 78 PPGPSGPSGPPVYHNQGPPRGYPPPPPQGADTWRGAPP 115
Score = 29.1 bits (62), Expect = 5.1
Identities = 19/54 (35%), Positives = 19/54 (35%), Gaps = 5/54 (9%)
Frame = +2
Query: 593 HAHX-PPGPXXPGPPXHSXXRXPXXGXTPXPGPGXXTXXGXXP----XXAAPPP 739
H H PPG GPP H P PGP P AAPPP
Sbjct: 119 HGHFGPPGHHFQGPPQHFPPGPPRPHFPGPPGPHRPPEHYPGPPRPQAPAAPPP 172
>U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protein
43 protein.
Length = 303
Score = 27.1 bits (57), Expect(2) = 2.2
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +2
Query: 413 PGAXGXRXAXPGRXGEXNQPXPRRXGGXP 499
PG G R PG GE QP P+ G P
Sbjct: 184 PGLPGPR-GPPGPPGEAGQPGPQGDAGTP 211
Score = 21.8 bits (44), Expect(2) = 2.2
Identities = 11/42 (26%), Positives = 13/42 (30%)
Frame = +2
Query: 614 PXXPGPPXHSXXRXPXXGXTPXPGPGXXTXXGXXPXXAAPPP 739
P PG P + P P PG G +P P
Sbjct: 216 PLTPGAPGEAGDAGPAGPPGPPGAPGNDGPPGPPGPKGSPGP 257
>AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen
protein.
Length = 303
Score = 27.1 bits (57), Expect(2) = 2.2
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +2
Query: 413 PGAXGXRXAXPGRXGEXNQPXPRRXGGXP 499
PG G R PG GE QP P+ G P
Sbjct: 184 PGLPGPR-GPPGPPGEAGQPGPQGDAGTP 211
Score = 21.8 bits (44), Expect(2) = 2.2
Identities = 11/42 (26%), Positives = 13/42 (30%)
Frame = +2
Query: 614 PXXPGPPXHSXXRXPXXGXTPXPGPGXXTXXGXXPXXAAPPP 739
P PG P + P P PG G +P P
Sbjct: 216 PLTPGAPGEAGDAGPAGPPGPPGAPGNDGPPGPPGPKGSPGP 257
>Z70756-6|CAA94792.1| 290|Caenorhabditis elegans Hypothetical
protein T06E4.6 protein.
Length = 290
Score = 29.9 bits (64), Expect = 2.9
Identities = 23/70 (32%), Positives = 24/70 (34%)
Frame = -1
Query: 769 GXGXRGXCXPRGRXGXXXXAXGXGXXSXSGXXGSPXVGXAAXXVXGRPXXXGAGGXMGVX 590
G RG P G G A G G SG G+P A G P G G G
Sbjct: 194 GQRSRGTPGPAGAPGPQGPAGGPGQPGQSGGAGAPGPA-GAPGAPGGPGQPGQDGQPG-- 250
Query: 589 APRRXPXXGG 560
AP GG
Sbjct: 251 APGNDGAPGG 260
>Z70756-4|CAA94788.1| 290|Caenorhabditis elegans Hypothetical
protein T06E4.4 protein.
Length = 290
Score = 29.9 bits (64), Expect = 2.9
Identities = 23/70 (32%), Positives = 24/70 (34%)
Frame = -1
Query: 769 GXGXRGXCXPRGRXGXXXXAXGXGXXSXSGXXGSPXVGXAAXXVXGRPXXXGAGGXMGVX 590
G RG P G G A G G SG G+P A G P G G G
Sbjct: 194 GQRSRGTPGPSGAPGPQGPAGGPGQPGQSGGAGAPGPA-GAPGAPGGPGNAGTPGTPG-- 250
Query: 589 APRRXPXXGG 560
AP GG
Sbjct: 251 APGNAGAPGG 260
>U50312-9|AAA92325.1| 294|Caenorhabditis elegans Collagen protein
10 protein.
Length = 294
Score = 29.9 bits (64), Expect = 2.9
Identities = 23/82 (28%), Positives = 25/82 (30%), Gaps = 2/82 (2%)
Frame = -1
Query: 775 GPGXGXRGXCXPRGRXGXXXXAXGXGXXSXSGXXGSPXVGX--AAXXVXGRPXXXGAGGX 602
GP G G P G G G G G+P A G+P G G
Sbjct: 153 GPA-GPEGPAGPAGPDGQPGAPGNAGNPGSDGQPGAPGDNGQDGAPGQDGQPGAPGQDGQ 211
Query: 601 MGVXAPRRXPXXGGRGPXXXFG 536
G AP G GP G
Sbjct: 212 RGSGAPGGPGAPGNAGPAGPAG 233
>U50312-7|AAA92323.2| 306|Caenorhabditis elegans Collagen protein
144 protein.
Length = 306
Score = 29.9 bits (64), Expect = 2.9
Identities = 23/82 (28%), Positives = 25/82 (30%), Gaps = 2/82 (2%)
Frame = -1
Query: 775 GPGXGXRGXCXPRGRXGXXXXAXGXGXXSXSGXXGSPXVGX--AAXXVXGRPXXXGAGGX 602
GP G G P G G G G G+P A G+P G G
Sbjct: 165 GPA-GPEGPAGPAGPDGQPGAPGNAGNPGSDGQPGAPGDNGQDGAPGQDGQPGAPGQDGQ 223
Query: 601 MGVXAPRRXPXXGGRGPXXXFG 536
G AP G GP G
Sbjct: 224 RGSGAPGGPGAPGNAGPAGPAG 245
>Z74036-2|CAA98487.1| 266|Caenorhabditis elegans Hypothetical
protein F55C10.3 protein.
Length = 266
Score = 29.5 bits (63), Expect = 3.8
Identities = 21/71 (29%), Positives = 22/71 (30%), Gaps = 2/71 (2%)
Frame = -1
Query: 757 RGXCXPRGRXGXXXXAXGXGXXSXSGXXGSPXV--GXAAXXVXGRPXXXGAGGXMGVXAP 584
+G P G G A G G G G P G P GA G G AP
Sbjct: 117 QGPPGPPGPPGPSGDAGGNGNPGSPGQDGQPGAPGNKGPSGPNGNPGAPGAPGQPGQDAP 176
Query: 583 RRXPXXGGRGP 551
G GP
Sbjct: 177 SEPITPGAPGP 187
>Z74036-1|CAA98486.1| 299|Caenorhabditis elegans Hypothetical
protein F55C10.2 protein.
Length = 299
Score = 29.5 bits (63), Expect = 3.8
Identities = 21/71 (29%), Positives = 22/71 (30%), Gaps = 2/71 (2%)
Frame = -1
Query: 757 RGXCXPRGRXGXXXXAXGXGXXSXSGXXGSPXV--GXAAXXVXGRPXXXGAGGXMGVXAP 584
+G P G G A G G G G P G P GA G G AP
Sbjct: 150 QGPPGPPGPPGPSGDAGGNGNPGSPGQDGQPGAPGNKGPSGPNGNPGAPGAPGQPGQDAP 209
Query: 583 RRXPXXGGRGP 551
G GP
Sbjct: 210 SEPITPGAPGP 220
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
protein C01G8.9a protein.
Length = 1724
Score = 29.5 bits (63), Expect = 3.8
Identities = 15/45 (33%), Positives = 16/45 (35%)
Frame = +2
Query: 605 PPGPXXPGPPXHSXXRXPXXGXTPXPGPGXXTXXGXXPXXAAPPP 739
P GP PGPP + P P P G G P P P
Sbjct: 814 PGGPVPPGPPQNRMPPPPPAQGAPSPS-GAAGSNGKQPRYGTPAP 857
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.1 bits (62), Expect = 5.1
Identities = 25/80 (31%), Positives = 25/80 (31%)
Frame = +3
Query: 537 PXXXXGPRPPXXGXRRGAXTPIXPPAPXXXGLPXTXXAAXPTXGEPXXPDXDXXPXPXAX 716
P GP PP G P PP P GLP T G P P P
Sbjct: 707 PPITGGP-PPPPGLPPITGGP--PPPPPPGGLPPI------TGGPPPPPPPGGLPPISGG 757
Query: 717 XXXPXRPRGXHXPRXPXPGP 776
P P G P P P P
Sbjct: 758 PPPPPPPPGGCPPPPPPPPP 777
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.1 bits (62), Expect = 5.1
Identities = 25/80 (31%), Positives = 25/80 (31%)
Frame = +3
Query: 537 PXXXXGPRPPXXGXRRGAXTPIXPPAPXXXGLPXTXXAAXPTXGEPXXPDXDXXPXPXAX 716
P GP PP G P PP P GLP T G P P P
Sbjct: 707 PPITGGP-PPPPGLPPITGGP--PPPPPPGGLPPI------TGGPPPPPPPGGLPPISGG 757
Query: 717 XXXPXRPRGXHXPRXPXPGP 776
P P G P P P P
Sbjct: 758 PPPPPPPPGGCPPPPPPPPP 777
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.1 bits (62), Expect = 5.1
Identities = 25/80 (31%), Positives = 25/80 (31%)
Frame = +3
Query: 537 PXXXXGPRPPXXGXRRGAXTPIXPPAPXXXGLPXTXXAAXPTXGEPXXPDXDXXPXPXAX 716
P GP PP G P PP P GLP T G P P P
Sbjct: 290 PPITGGP-PPPPGLPPITGGP--PPPPPPGGLPPI------TGGPPPPPPPGGLPPISGG 340
Query: 717 XXXPXRPRGXHXPRXPXPGP 776
P P G P P P P
Sbjct: 341 PPPPPPPPGGCPPPPPPPPP 360
>AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen protein
103 protein.
Length = 371
Score = 29.1 bits (62), Expect = 5.1
Identities = 21/68 (30%), Positives = 22/68 (32%)
Frame = -1
Query: 775 GPGXGXRGXCXPRGRXGXXXXAXGXGXXSXSGXXGSPXVGXAAXXVXGRPXXXGAGGXMG 596
G G G G P GR G G G G+P A GR G GG G
Sbjct: 276 GYGVGPPGPPGPSGRPGAPGQPGPDGQPGAPGNDGTPGTDAAYCPCPGR---GGGGGGYG 332
Query: 595 VXAPRRXP 572
A P
Sbjct: 333 AGAHHGGP 340
>Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical
protein F45B8.3 protein.
Length = 241
Score = 28.7 bits (61), Expect = 6.7
Identities = 15/47 (31%), Positives = 17/47 (36%)
Frame = +2
Query: 599 HXPPGPXXPGPPXHSXXRXPXXGXTPXPGPGXXTXXGXXPXXAAPPP 739
+ PP P P PP S P G +P P P PPP
Sbjct: 83 YVPPAPLPPPPPPAS----PCCGPSPVPAPCCPPPPAPAAPCCPPPP 125
>AL032632-7|CAA21586.1| 313|Caenorhabditis elegans Hypothetical
protein Y11D7A.11 protein.
Length = 313
Score = 28.7 bits (61), Expect = 6.7
Identities = 20/72 (27%), Positives = 21/72 (29%), Gaps = 1/72 (1%)
Frame = -1
Query: 763 GXRGXCXPRGRXGXXXXAXGXGXXSXSGXXGSPXVGXAAXXVXGRPXXXGAGGXMGVXAP 584
G G C G G G G G P G P GA G G P
Sbjct: 196 GRNGRCGRPGEQGERGPNGEDGRPGRRGDDGMPGTVNEIPGQAGPPGLRGAPGATGSQGP 255
Query: 583 R-RXPXXGGRGP 551
R G +GP
Sbjct: 256 RGNDGRPGNKGP 267
>Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical
protein C29F4.1 protein.
Length = 299
Score = 28.3 bits (60), Expect = 8.9
Identities = 21/76 (27%), Positives = 22/76 (28%)
Frame = -1
Query: 763 GXRGXCXPRGRXGXXXXAXGXGXXSXSGXXGSPXVGXAAXXVXGRPXXXGAGGXMGVXAP 584
G G P G G G G G+P G P GA G G AP
Sbjct: 151 GPAGAPGPAGPAGDAGANGNPGAPGQDGQPGAPG-NKGPSGPNGNPGAPGAPGQPGQDAP 209
Query: 583 RRXPXXGGRGPXXXFG 536
G GP G
Sbjct: 210 SEPITPGAPGPAGPAG 225
>Z54238-5|CAA90997.1| 299|Caenorhabditis elegans Hypothetical
protein T28C6.6 protein.
Length = 299
Score = 28.3 bits (60), Expect = 8.9
Identities = 21/76 (27%), Positives = 22/76 (28%)
Frame = -1
Query: 763 GXRGXCXPRGRXGXXXXAXGXGXXSXSGXXGSPXVGXAAXXVXGRPXXXGAGGXMGVXAP 584
G G P G G G G G+P G P GA G G AP
Sbjct: 151 GPAGAPGPAGPAGDAGANGNPGAPGNDGQPGAPG-NKGPSGPNGNPGAPGAPGQPGQDAP 209
Query: 583 RRXPXXGGRGPXXXFG 536
G GP G
Sbjct: 210 SEPITPGAPGPAGPAG 225
>Z54238-3|CAA90995.1| 299|Caenorhabditis elegans Hypothetical
protein T28C6.4 protein.
Length = 299
Score = 28.3 bits (60), Expect = 8.9
Identities = 21/76 (27%), Positives = 22/76 (28%)
Frame = -1
Query: 763 GXRGXCXPRGRXGXXXXAXGXGXXSXSGXXGSPXVGXAAXXVXGRPXXXGAGGXMGVXAP 584
G G P G G G G G+P G P GA G G AP
Sbjct: 151 GPAGAPGPAGPAGDAGANGNPGAPGNDGQPGAPG-NKGPSGPNGNPGAPGAPGQPGQDAP 209
Query: 583 RRXPXXGGRGPXXXFG 536
G GP G
Sbjct: 210 SEPITPGAPGPAGPAG 225
>U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 3 protein.
Length = 302
Score = 28.3 bits (60), Expect = 8.9
Identities = 19/61 (31%), Positives = 21/61 (34%)
Frame = +3
Query: 555 PRPPXXGXRRGAXTPIXPPAPXXXGLPXTXXAAXPTXGEPXXPDXDXXPXPXAXXXXPXR 734
P+PP G P PP P GLP A T G+ P P P P
Sbjct: 149 PKPPCQKCPPGPPGPAGPPGP--KGLPGPQGDAG-TSGQDGVPGLPGPPGPSGPQGAPGV 205
Query: 735 P 737
P
Sbjct: 206 P 206
>AY347576-1|AAP97870.1| 299|Caenorhabditis elegans COLlagen
structural gene, probablecuticle component, from embryo
to adult (28.7 kD) (col-3) protein.
Length = 299
Score = 28.3 bits (60), Expect = 8.9
Identities = 21/76 (27%), Positives = 22/76 (28%)
Frame = -1
Query: 763 GXRGXCXPRGRXGXXXXAXGXGXXSXSGXXGSPXVGXAAXXVXGRPXXXGAGGXMGVXAP 584
G G P G G G G G+P G P GA G G AP
Sbjct: 151 GPAGAPGPAGPAGDAGANGNPGAPGNDGQPGAPG-NKGPSGPNGNPGAPGAPGQPGQDAP 209
Query: 583 RRXPXXGGRGPXXXFG 536
G GP G
Sbjct: 210 SEPITPGAPGPAGPAG 225
>AY347574-1|AAP97868.1| 299|Caenorhabditis elegans COLlagen
structural gene, probablecuticle component, from embryo
to adult (28.7 kD) (col-117) protein.
Length = 299
Score = 28.3 bits (60), Expect = 8.9
Identities = 21/76 (27%), Positives = 22/76 (28%)
Frame = -1
Query: 763 GXRGXCXPRGRXGXXXXAXGXGXXSXSGXXGSPXVGXAAXXVXGRPXXXGAGGXMGVXAP 584
G G P G G G G G+P G P GA G G AP
Sbjct: 151 GPAGAPGPAGPAGDAGANGNPGAPGNDGQPGAPG-NKGPSGPNGNPGAPGAPGQPGQDAP 209
Query: 583 RRXPXXGGRGPXXXFG 536
G GP G
Sbjct: 210 SEPITPGAPGPAGPAG 225
>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
protein Y53C10A.10 protein.
Length = 1582
Score = 28.3 bits (60), Expect = 8.9
Identities = 17/58 (29%), Positives = 18/58 (31%), Gaps = 1/58 (1%)
Frame = +3
Query: 606 PPAPXXXGLPXTXXAAXPTXGEPXXPDXDXXPXPXAXXXXPXRPRGXHXPRXPXP-GP 776
PP P +P P P P P P P P G P P P GP
Sbjct: 927 PPIPVPNPIPKPNPGPGPGPPSPNGPSDPNKPSPNG--PSPNGPNGPSDPNKPGPSGP 982
>AF047656-13|AAC05105.1| 313|Caenorhabditis elegans Collagen
protein 116 protein.
Length = 313
Score = 28.3 bits (60), Expect = 8.9
Identities = 16/45 (35%), Positives = 18/45 (40%)
Frame = +2
Query: 605 PPGPXXPGPPXHSXXRXPXXGXTPXPGPGXXTXXGXXPXXAAPPP 739
PPGP PGPP + + P PG P AA PP
Sbjct: 191 PPGP--PGPPGYPGRQGCQGKDGPSGDPGLRFIKTPGPVGAAGPP 233
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,655,488
Number of Sequences: 27780
Number of extensions: 159345
Number of successful extensions: 807
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2563248310
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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