Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_D18
(969 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC039322-1|AAH39322.1| 401|Homo sapiens RBM17 protein protein. 46 2e-04
BC009064-1|AAH09064.1| 369|Homo sapiens RBM17 protein protein. 46 2e-04
BC007871-1|AAH07871.1| 401|Homo sapiens RNA binding motif prote... 46 2e-04
AL157395-8|CAH73602.1| 401|Homo sapiens RNA binding motif prote... 46 2e-04
AL157395-7|CAH73601.1| 221|Homo sapiens RNA binding motif prote... 46 2e-04
AL157395-6|CAH73600.1| 212|Homo sapiens RNA binding motif prote... 46 2e-04
AF542550-1|AAQ09533.1| 401|Homo sapiens unknown protein. 46 2e-04
AL157395-9|CAH73603.1| 224|Homo sapiens RNA binding motif prote... 40 0.018
AL157395-5|CAH73599.1| 243|Homo sapiens RNA binding motif prote... 40 0.018
>BC039322-1|AAH39322.1| 401|Homo sapiens RBM17 protein protein.
Length = 401
Score = 46.4 bits (105), Expect = 2e-04
Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Frame = +1
Query: 484 AAVTQPKREALRRSTQVLTPVIDLXXXXXXXXXXXXXXPKIQPK----TITASLNVRDFD 651
AA+TQ K + ++ST VL PVIDL P + + + +
Sbjct: 35 AALTQAKSQRTKQST-VLAPVIDLKRGGSSDDRQIVDTPPHVAAGLKDPVPSGFSAGEVL 93
Query: 652 WNVANEYDPMWPNDYEKVAKELQAKRLSQ 738
+A+EYDPM+PNDYEKV K + +R Q
Sbjct: 94 IPLADEYDPMFPNDYEKVVKRQREERQRQ 122
>BC009064-1|AAH09064.1| 369|Homo sapiens RBM17 protein protein.
Length = 369
Score = 46.4 bits (105), Expect = 2e-04
Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Frame = +1
Query: 484 AAVTQPKREALRRSTQVLTPVIDLXXXXXXXXXXXXXXPKIQPK----TITASLNVRDFD 651
AA+TQ K + ++ST VL PVIDL P + + + +
Sbjct: 3 AALTQAKSQRTKQST-VLAPVIDLKRGGSSDDRQIVDTPPHVAAGLKDPVPSGFSAGEVL 61
Query: 652 WNVANEYDPMWPNDYEKVAKELQAKRLSQ 738
+A+EYDPM+PNDYEKV K + +R Q
Sbjct: 62 IPLADEYDPMFPNDYEKVVKRQREERQRQ 90
>BC007871-1|AAH07871.1| 401|Homo sapiens RNA binding motif protein
17 protein.
Length = 401
Score = 46.4 bits (105), Expect = 2e-04
Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Frame = +1
Query: 484 AAVTQPKREALRRSTQVLTPVIDLXXXXXXXXXXXXXXPKIQPK----TITASLNVRDFD 651
AA+TQ K + ++ST VL PVIDL P + + + +
Sbjct: 35 AALTQAKSQRTKQST-VLAPVIDLKRGGSSDDRQIVDTPPHVAAGLKDPVPSGFSAGEVL 93
Query: 652 WNVANEYDPMWPNDYEKVAKELQAKRLSQ 738
+A+EYDPM+PNDYEKV K + +R Q
Sbjct: 94 IPLADEYDPMFPNDYEKVVKRQREERQRQ 122
>AL157395-8|CAH73602.1| 401|Homo sapiens RNA binding motif protein
17 protein.
Length = 401
Score = 46.4 bits (105), Expect = 2e-04
Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Frame = +1
Query: 484 AAVTQPKREALRRSTQVLTPVIDLXXXXXXXXXXXXXXPKIQPK----TITASLNVRDFD 651
AA+TQ K + ++ST VL PVIDL P + + + +
Sbjct: 35 AALTQAKSQRTKQST-VLAPVIDLKRGGSSDDRQIVDTPPHVAAGLKDPVPSGFSAGEVL 93
Query: 652 WNVANEYDPMWPNDYEKVAKELQAKRLSQ 738
+A+EYDPM+PNDYEKV K + +R Q
Sbjct: 94 IPLADEYDPMFPNDYEKVVKRQREERQRQ 122
>AL157395-7|CAH73601.1| 221|Homo sapiens RNA binding motif protein
17 protein.
Length = 221
Score = 46.4 bits (105), Expect = 2e-04
Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Frame = +1
Query: 484 AAVTQPKREALRRSTQVLTPVIDLXXXXXXXXXXXXXXPKIQPK----TITASLNVRDFD 651
AA+TQ K + ++ST VL PVIDL P + + + +
Sbjct: 35 AALTQAKSQRTKQST-VLAPVIDLKRGGSSDDRQIVDTPPHVAAGLKDPVPSGFSAGEVL 93
Query: 652 WNVANEYDPMWPNDYEKVAKELQAKRLSQ 738
+A+EYDPM+PNDYEKV K + +R Q
Sbjct: 94 IPLADEYDPMFPNDYEKVVKRQREERQRQ 122
>AL157395-6|CAH73600.1| 212|Homo sapiens RNA binding motif protein
17 protein.
Length = 212
Score = 46.4 bits (105), Expect = 2e-04
Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Frame = +1
Query: 484 AAVTQPKREALRRSTQVLTPVIDLXXXXXXXXXXXXXXPKIQPK----TITASLNVRDFD 651
AA+TQ K + ++ST VL PVIDL P + + + +
Sbjct: 35 AALTQAKSQRTKQST-VLAPVIDLKRGGSSDDRQIVDTPPHVAAGLKDPVPSGFSAGEVL 93
Query: 652 WNVANEYDPMWPNDYEKVAKELQAKRLSQ 738
+A+EYDPM+PNDYEKV K + +R Q
Sbjct: 94 IPLADEYDPMFPNDYEKVVKRQREERQRQ 122
>AF542550-1|AAQ09533.1| 401|Homo sapiens unknown protein.
Length = 401
Score = 46.4 bits (105), Expect = 2e-04
Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Frame = +1
Query: 484 AAVTQPKREALRRSTQVLTPVIDLXXXXXXXXXXXXXXPKIQPK----TITASLNVRDFD 651
AA+TQ K + ++ST VL PVIDL P + + + +
Sbjct: 35 AALTQAKSQRTKQST-VLAPVIDLKRGGSSDDRQIVDTPPHVAAGLKDPVPSGFSAGEVL 93
Query: 652 WNVANEYDPMWPNDYEKVAKELQAKRLSQ 738
+A+EYDPM+PNDYEKV K + +R Q
Sbjct: 94 IPLADEYDPMFPNDYEKVVKRQREERQRQ 122
>AL157395-9|CAH73603.1| 224|Homo sapiens RNA binding motif protein
17 protein.
Length = 224
Score = 39.5 bits (88), Expect = 0.018
Identities = 16/27 (59%), Positives = 21/27 (77%)
Frame = +1
Query: 658 VANEYDPMWPNDYEKVAKELQAKRLSQ 738
+A+EYDPM+PNDYEKV K + +R Q
Sbjct: 2 LADEYDPMFPNDYEKVVKRQREERQRQ 28
>AL157395-5|CAH73599.1| 243|Homo sapiens RNA binding motif protein
17 protein.
Length = 243
Score = 39.5 bits (88), Expect = 0.018
Identities = 16/27 (59%), Positives = 21/27 (77%)
Frame = +1
Query: 658 VANEYDPMWPNDYEKVAKELQAKRLSQ 738
+A+EYDPM+PNDYEKV K + +R Q
Sbjct: 64 LADEYDPMFPNDYEKVVKRQREERQRQ 90
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,537,645
Number of Sequences: 237096
Number of extensions: 1684836
Number of successful extensions: 2745
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2745
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12880737904
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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