Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_D18
         (969 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT012503-1|AAS93774.1|  363|Drosophila melanogaster AT25717p pro...    39   0.009
DQ295864-1|ABB99954.1|  403|Drosophila melanogaster RNA binding ...    39   0.012
BT012461-1|AAS93732.1|  371|Drosophila melanogaster RE44883p pro...    39   0.012
AY071532-1|AAL49154.1|  379|Drosophila melanogaster RE57542p pro...    39   0.012
AE014134-3634|EAA46009.2|  363|Drosophila melanogaster CG17540-P...    39   0.012
AE014134-3633|EAA46010.2|  371|Drosophila melanogaster CG17540-P...    39   0.012
AE014134-3632|EAA46008.1|  403|Drosophila melanogaster CG17540-P...    39   0.012

>BT012503-1|AAS93774.1|  363|Drosophila melanogaster AT25717p
           protein.
          Length = 363

 Score = 39.1 bits (87), Expect = 0.009
 Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
 Frame = +1

Query: 598 PKIQPKTITASL-NVRDFDWNVANEYDPMWPNDYEKVAKE 714
           P I  K + + L ++   DW+VA+EYDP  PN+YEK+ ++
Sbjct: 30  PLISGKALPSILESINRGDWDVADEYDPQRPNEYEKLKEK 69


>DQ295864-1|ABB99954.1|  403|Drosophila melanogaster RNA binding
           motif protein 17 protein.
          Length = 403

 Score = 38.7 bits (86), Expect = 0.012
 Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = +1

Query: 598 PKIQPKTITASLN-VRDFDWNVANEYDPMWPNDYEKVAKE 714
           P I  K + + L  +   DW+VA+EYDP  PN+YEK+ ++
Sbjct: 70  PLISGKALPSILERINRGDWDVADEYDPQRPNEYEKLKEK 109


>BT012461-1|AAS93732.1|  371|Drosophila melanogaster RE44883p
           protein.
          Length = 371

 Score = 38.7 bits (86), Expect = 0.012
 Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = +1

Query: 598 PKIQPKTITASLN-VRDFDWNVANEYDPMWPNDYEKVAKE 714
           P I  K + + L  +   DW+VA+EYDP  PN+YEK+ ++
Sbjct: 38  PLISGKALPSILERINRGDWDVADEYDPQRPNEYEKLKEK 77


>AY071532-1|AAL49154.1|  379|Drosophila melanogaster RE57542p
           protein.
          Length = 379

 Score = 38.7 bits (86), Expect = 0.012
 Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = +1

Query: 598 PKIQPKTITASLN-VRDFDWNVANEYDPMWPNDYEKVAKE 714
           P I  K + + L  +   DW+VA+EYDP  PN+YEK+ ++
Sbjct: 46  PLISGKALPSILERINRGDWDVADEYDPQRPNEYEKLKEK 85


>AE014134-3634|EAA46009.2|  363|Drosophila melanogaster CG17540-PC,
           isoform C protein.
          Length = 363

 Score = 38.7 bits (86), Expect = 0.012
 Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = +1

Query: 598 PKIQPKTITASLN-VRDFDWNVANEYDPMWPNDYEKVAKE 714
           P I  K + + L  +   DW+VA+EYDP  PN+YEK+ ++
Sbjct: 30  PLISGKALPSILERINRGDWDVADEYDPQRPNEYEKLKEK 69


>AE014134-3633|EAA46010.2|  371|Drosophila melanogaster CG17540-PB,
           isoform B protein.
          Length = 371

 Score = 38.7 bits (86), Expect = 0.012
 Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = +1

Query: 598 PKIQPKTITASLN-VRDFDWNVANEYDPMWPNDYEKVAKE 714
           P I  K + + L  +   DW+VA+EYDP  PN+YEK+ ++
Sbjct: 38  PLISGKALPSILERINRGDWDVADEYDPQRPNEYEKLKEK 77


>AE014134-3632|EAA46008.1|  403|Drosophila melanogaster CG17540-PA,
           isoform A protein.
          Length = 403

 Score = 38.7 bits (86), Expect = 0.012
 Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = +1

Query: 598 PKIQPKTITASLN-VRDFDWNVANEYDPMWPNDYEKVAKE 714
           P I  K + + L  +   DW+VA+EYDP  PN+YEK+ ++
Sbjct: 70  PLISGKALPSILERINRGDWDVADEYDPQRPNEYEKLKEK 109


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,071,124
Number of Sequences: 53049
Number of extensions: 558919
Number of successful extensions: 1511
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1507
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4853571111
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)