Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_D16
(902 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 29 1.2
SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces po... 28 1.6
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 27 3.6
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 27 3.6
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 27 3.6
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 27 3.6
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 27 3.6
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 27 3.6
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 27 3.6
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 27 3.6
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 27 3.6
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 27 3.6
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 27 3.6
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 4.8
SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces po... 27 4.8
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 8.4
SPAC977.14c |||aldo/keto reductase, unknown biological role|Schi... 26 8.4
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 28.7 bits (61), Expect = 1.2
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = -2
Query: 361 LVTKQCNARSTRAVNSVRH-KHLQKKKNKAVLNTVSKLIPI*KTKNTLIDNEIKKETNLN 185
L ++ +A +T ++ R K KK + +SK +PI KT ID E+ K + N
Sbjct: 1101 LEQEKADASTTTVLSDSRFMKAPTKKSQREKKKELSKQVPISKTNVGHIDIELGKSNHSN 1160
Query: 184 PY 179
P+
Sbjct: 1161 PW 1162
>SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 28.3 bits (60), Expect = 1.6
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -2
Query: 280 KAVLNTVSKLIPI*KTKNTLIDNEIKKETNLNPYLNLIVRNHI 152
+AV N S L K N L+ ++ ++NPY NL + N++
Sbjct: 3 EAVTNPKSSLATFSKQLNGLLQAKVVVCKSVNPYFNLALENYL 45
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 3.6
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 619 KSQTANVKRDADVGVALANRDAGIREAECEKNAMDVKY 732
KS++ +VK DV L N + I +A+CE + VK+
Sbjct: 573 KSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKF 610
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 3.6
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 619 KSQTANVKRDADVGVALANRDAGIREAECEKNAMDVKY 732
KS++ +VK DV L N + I +A+CE + VK+
Sbjct: 573 KSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKF 610
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 3.6
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 619 KSQTANVKRDADVGVALANRDAGIREAECEKNAMDVKY 732
KS++ +VK DV L N + I +A+CE + VK+
Sbjct: 573 KSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKF 610
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 3.6
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 619 KSQTANVKRDADVGVALANRDAGIREAECEKNAMDVKY 732
KS++ +VK DV L N + I +A+CE + VK+
Sbjct: 573 KSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKF 610
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 3.6
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 619 KSQTANVKRDADVGVALANRDAGIREAECEKNAMDVKY 732
KS++ +VK DV L N + I +A+CE + VK+
Sbjct: 573 KSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKF 610
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 3.6
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 619 KSQTANVKRDADVGVALANRDAGIREAECEKNAMDVKY 732
KS++ +VK DV L N + I +A+CE + VK+
Sbjct: 573 KSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKF 610
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 3.6
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 619 KSQTANVKRDADVGVALANRDAGIREAECEKNAMDVKY 732
KS++ +VK DV L N + I +A+CE + VK+
Sbjct: 573 KSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKF 610
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 3.6
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 619 KSQTANVKRDADVGVALANRDAGIREAECEKNAMDVKY 732
KS++ +VK DV L N + I +A+CE + VK+
Sbjct: 573 KSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKF 610
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 3.6
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 619 KSQTANVKRDADVGVALANRDAGIREAECEKNAMDVKY 732
KS++ +VK DV L N + I +A+CE + VK+
Sbjct: 573 KSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKF 610
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 3.6
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 619 KSQTANVKRDADVGVALANRDAGIREAECEKNAMDVKY 732
KS++ +VK DV L N + I +A+CE + VK+
Sbjct: 573 KSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKF 610
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 3.6
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 619 KSQTANVKRDADVGVALANRDAGIREAECEKNAMDVKY 732
KS++ +VK DV L N + I +A+CE + VK+
Sbjct: 573 KSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKF 610
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 26.6 bits (56), Expect = 4.8
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = +3
Query: 186 LRFVSFLISLSINVFL--VF*IGINFETVLRTALFFFFCKCL 305
L F+SF S S FL +F + + +L FFF C C+
Sbjct: 124 LFFLSFSFSFSFLFFLSQIFIVYFSSFPILHFLFFFFLCVCV 165
>SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 586
Score = 26.6 bits (56), Expect = 4.8
Identities = 11/47 (23%), Positives = 23/47 (48%)
Frame = +1
Query: 520 EVAAPDVGRMGIEILSFTIKDVYDDVQYLASLGKSQTANVKRDADVG 660
E + D + +L TI+DV+D ++++ + V R ++G
Sbjct: 464 ETVSQDTSLTSVTVLPRTIRDVFDRIRFVLNGLTDNNVEVSRHNNIG 510
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 25.8 bits (54), Expect = 8.4
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Frame = -1
Query: 707 SHSASLIPASRLARAT--PTSASLFTLAVCDFPKLARYWTSS*TSLIVKDRISIPILPTS 534
S S+S + +S L+ ++ P+S+S + + L+ ++S S +D SI L ++
Sbjct: 133 SSSSSGMSSSSLSHSSSVPSSSSSYHSSSMTTSGLSS--SASIVSSTYRDGPSIITLVST 190
Query: 533 GAATSRTKPA---NW-SLSLYTSSTVRVPFENSYS 441
+ P NW S S +TSST P +SYS
Sbjct: 191 SYVSEVVTPTTTNNWNSSSSFTSSTSSTPISSSYS 225
>SPAC977.14c |||aldo/keto reductase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 351
Score = 25.8 bits (54), Expect = 8.4
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 727 KYSMDTKIEDNXRLFKLQKAQFDQXIXT 810
+Y D +ED +FK+ KA +D I T
Sbjct: 33 EYWEDWVLEDEEEVFKIMKAAYDAGIRT 60
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,258,198
Number of Sequences: 5004
Number of extensions: 66123
Number of successful extensions: 183
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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