Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_D16
(902 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0061 + 31352703-31353037,31353145-31353274,31353708-313539... 31 1.7
10_07_0138 + 13325418-13325954 30 2.2
02_05_1147 - 34447519-34448042,34448126-34449092,34449458-344496... 30 2.2
05_07_0045 - 27304696-27305299,27305392-27305521,27305625-27305760 29 6.7
03_05_0877 + 28443481-28443538,28443641-28443911,28444028-284442... 29 6.7
10_01_0222 - 2387703-2387744,2387797-2388119,2388170-2388251 28 8.8
08_02_1034 + 23823194-23823307,23823399-23823620,23823984-238243... 28 8.8
04_04_0589 + 26449184-26450500,26452220-26452310,26452428-264525... 28 8.8
>03_06_0061 +
31352703-31353037,31353145-31353274,31353708-31353902,
31354696-31354725,31355238-31355395,31355756-31355846,
31355924-31355989,31356331-31356413,31356495-31356558,
31356641-31356709,31356798-31356833
Length = 418
Score = 30.7 bits (66), Expect = 1.7
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -1
Query: 416 KYVHPYQRHSCERARRRPLS 357
+Y HP+ HS R RRRPL+
Sbjct: 32 RYAHPHHHHSNSRRRRRPLA 51
>10_07_0138 + 13325418-13325954
Length = 178
Score = 30.3 bits (65), Expect = 2.2
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 476 KRCTKTGTNSRAWYAKWLRRTSEEWESRFCPSRLR 580
+RC++ SR W ++ RR W R C R R
Sbjct: 85 RRCSRRWRRSRRWRSRCSRRWRRSWRRRRCSRRWR 119
>02_05_1147 -
34447519-34448042,34448126-34449092,34449458-34449657,
34449867-34450051,34450130-34450228,34450316-34450357,
34450516-34450860,34450956-34451101,34451213-34451296,
34451424-34451502,34451596-34451675,34451824-34451875,
34451992-34452026
Length = 945
Score = 30.3 bits (65), Expect = 2.2
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +1
Query: 592 DVQYLASLGKSQTANVKRDADVGVALANRDAGIREAECEKNAMDVKY 732
D QY+ S G+ Q +NV+R + V+L N I+E + A KY
Sbjct: 114 DFQYIDSSGRDQGSNVRRKSQSLVSLVNDKERIQEVRQKALATRDKY 160
>05_07_0045 - 27304696-27305299,27305392-27305521,27305625-27305760
Length = 289
Score = 28.7 bits (61), Expect = 6.7
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -1
Query: 680 SRLARATPTSASLFTLAVCDFPKLARYWTSS 588
S A A P S + L+ C FP +A W +S
Sbjct: 244 SGFAGAAPDSKATLELSACYFPNMAEMWAAS 274
>03_05_0877 +
28443481-28443538,28443641-28443911,28444028-28444242,
28444329-28445057,28445143-28445297,28445384-28445965
Length = 669
Score = 28.7 bits (61), Expect = 6.7
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = +3
Query: 471 SRRGVQRQGPIRG--LGTRSGCAGRRKNGNRDSVLHD*G 581
++ G + +GP+ G LGT C G +NG+ D V +D G
Sbjct: 29 AKGGRKTKGPVIGIDLGTTYSCVGVYRNGHVDIVANDQG 67
>10_01_0222 - 2387703-2387744,2387797-2388119,2388170-2388251
Length = 148
Score = 28.3 bits (60), Expect = 8.8
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 541 GRMGIEILSFTIKDVYDDVQYLASLGKSQTANVKRDADVGVAL 669
G MG I F+IKD+Y+D + + S ++ D ++ V L
Sbjct: 10 GMMGPIIKVFSIKDIYEDAKSIISPSSYSDSDSNSDDEMEVVL 52
>08_02_1034 +
23823194-23823307,23823399-23823620,23823984-23824309,
23824648-23824777,23825145-23825441,23825550-23825815,
23827835-23828333,23828902-23828993,23829571-23829735,
23829817-23830204,23830275-23830393,23830494-23830524,
23830675-23830880,23830970-23831014,23831120-23831201,
23832210-23832398,23834499-23834602,23834669-23834759,
23835097-23835225,23835425-23835556,23835779-23835949,
23836143-23836171,23836214-23836301,23836313-23836391,
23836666-23836844
Length = 1390
Score = 28.3 bits (60), Expect = 8.8
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = -2
Query: 196 TNLNPYLNLIVRNHINNITVTFIVIDDFVYTRF 98
TNL+ +N IV +H+N +T+ +V ++ + F
Sbjct: 862 TNLDDSINDIVSSHLNKLTIIQVVCEELEWLPF 894
>04_04_0589 +
26449184-26450500,26452220-26452310,26452428-26452585,
26452670-26452768,26453296-26453345,26453654-26453705,
26453773-26454058,26454286-26454400,26454938-26455020,
26455381-26455466
Length = 778
Score = 28.3 bits (60), Expect = 8.8
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = -2
Query: 454 RTAIVVTRVNPRLNMFIHIRDIAVKEPVEGPLVTKQCNARSTRAVNSVRHKHLQKKKNK 278
R+ VV+ N + +AV P G +T + N+R T +S+ +H Q K +
Sbjct: 591 RSKAVVSVTNSYEHFHCQDVTVAVALPSAGSAMTSRTNSRKTEEQDSIPQQHTQPDKQQ 649
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,220,970
Number of Sequences: 37544
Number of extensions: 401873
Number of successful extensions: 1094
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1094
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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