Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_D16
         (902 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39646-5|AAK72057.1|  678|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AC006638-4|AAP82654.1|  312|Caenorhabditis elegans Stomatin prot...    31   1.1  
AC006638-3|AAK85483.1|  367|Caenorhabditis elegans Stomatin prot...    31   1.1  

>U39646-5|AAK72057.1|  678|Caenorhabditis elegans Hypothetical
           protein F47B7.2b protein.
          Length = 678

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
 Frame = -3

Query: 684 SISVSQSYTNVSVPLHVGRLRLPQAGQILDIVVDVL-NREGQNLDSHSS--DVRRSHFAY 514
           ++S  Q + N    +H G++   +A   +  V+D    R  +++D +    D  RSH+ +
Sbjct: 570 TLSAGQRHLNPKFQVHAGKVDQLEANDKVKNVLDASPQRTWKDIDGYDGLPDSGRSHYYF 629

Query: 513 QARELVPVFVHLFYCK 466
               L+ V + + YCK
Sbjct: 630 IFLSLIGVALIVIYCK 645


>AC006638-4|AAP82654.1|  312|Caenorhabditis elegans Stomatin protein
           5, isoform b protein.
          Length = 312

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 19/75 (25%), Positives = 33/75 (44%)
 Frame = +1

Query: 460 GTLTVEEVYKDRDQFAGLVREVAAPDVGRMGIEILSFTIKDVYDDVQYLASLGKSQTANV 639
           GT T+ E+  +RD  A +  +V        G+++    IKD+    Q + S+     A  
Sbjct: 236 GTKTLSEMLSERDAIASISEKVLDEGTDPWGVKVERVEIKDIRLPHQLMRSMAAKAEAVR 295

Query: 640 KRDADVGVALANRDA 684
           +  A +  A   +DA
Sbjct: 296 RARAAIIAAQGEKDA 310


>AC006638-3|AAK85483.1|  367|Caenorhabditis elegans Stomatin protein
           5, isoform a protein.
          Length = 367

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 19/75 (25%), Positives = 33/75 (44%)
 Frame = +1

Query: 460 GTLTVEEVYKDRDQFAGLVREVAAPDVGRMGIEILSFTIKDVYDDVQYLASLGKSQTANV 639
           GT T+ E+  +RD  A +  +V        G+++    IKD+    Q + S+     A  
Sbjct: 236 GTKTLSEMLSERDAIASISEKVLDEGTDPWGVKVERVEIKDIRLPHQLMRSMAAKAEAVR 295

Query: 640 KRDADVGVALANRDA 684
           +  A +  A   +DA
Sbjct: 296 RARAAIIAAQGEKDA 310


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,844,888
Number of Sequences: 27780
Number of extensions: 362142
Number of successful extensions: 1064
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1063
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2297313942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)