Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_D15
(904 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe... 276 3e-75
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po... 30 0.52
SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 27 2.8
SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein L20|Sc... 27 3.6
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 27 3.6
SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosom... 27 3.6
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 26 6.4
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ... 26 8.4
>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 276 bits (677), Expect = 3e-75
Identities = 136/220 (61%), Positives = 166/220 (75%), Gaps = 3/220 (1%)
Frame = +2
Query: 206 YKIADEKLAEWGRKEIMLAEKEMPGLMACRRKYAPAKILKGARIAGSLHMTVQTAVLIET 385
YK+AD LA +GRKE+ +AE EMPGL+A R KYA ++ LKGARIAG LHMT+QTAVLIET
Sbjct: 6 YKVADISLAAFGRKELEIAENEMPGLIAVREKYAKSQPLKGARIAGCLHMTIQTAVLIET 65
Query: 386 LIELGAEVQWSSSNIYSTQDEAAAALVAVGIPIYAWKGETDDEYIWCIEQTL-IFPDGKP 562
L+ LGAEV WSS NIYSTQD AAAA+ A G+P++AWKGET++EY+WCIEQ L FP GKP
Sbjct: 66 LVALGAEVTWSSCNIYSTQDHAAAAIAATGVPVFAWKGETEEEYLWCIEQQLKSFPSGKP 125
Query: 563 LNMILDDGGDLTNLVHTKYPDLLKDVKGITEETTTGVHNLYKMFRERTFKSSCNQR*RFS 742
LNMILDDGGDLT LVH ++P+LL D++GI+EETTTGVHNLYKMF+E K
Sbjct: 126 LNMILDDGGDLTALVHERHPELLVDIRGISEETTTGVHNLYKMFKENKLKVPAINVNDSV 185
Query: 743 NKKQFDTVW-M*GVLLDGIKXQQTX*LPGS-CVLAGYGDV 856
K +FD ++ L+DGIK + G V+AG+GDV
Sbjct: 186 TKSKFDNLFGCKESLVDGIKRATDVMIAGKVAVVAGFGDV 225
>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 472
Score = 29.9 bits (64), Expect = 0.52
Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 6/72 (8%)
Frame = -1
Query: 337 YSGTFEYFSWSIFPTTCHKAWHFFLC*H------NFFSAPFSQFLVSDFVRRLHFVVQSL 176
Y + ++W F T +K H+FL H +F S S F LH +V
Sbjct: 356 YDDWWNCWTWDQFARTWNKPVHYFLLRHVYVPLNSFMSKSLSTFFTFFVSSVLHELVMGC 415
Query: 175 IYLXVNSLAVFF 140
I L + +FF
Sbjct: 416 ITLKIRGYGLFF 427
>SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 314
Score = 27.5 bits (58), Expect = 2.8
Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 3/86 (3%)
Frame = +1
Query: 109 YFRYFNKNNLKRKQQV---NLPVGISNFVLQNEASLQNR*REIG*MGPKRNYVSRERNAR 279
YF N +N++ K++ NL +S F E + QN + + K++ + ++RN
Sbjct: 174 YFDVINDSNVENKEETKDRNLDRALSKFTQSREKNEQNLSSKASVLRNKKSILLKKRNQD 233
Query: 280 PYGMSSEICSS*NTQRCQNSRQLTHD 357
+++E S N HD
Sbjct: 234 ETQLTTEEDFSANNDSTAKIETSIHD 259
>SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein
L20|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 27.1 bits (57), Expect = 3.6
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +2
Query: 557 KPLNMILDDGGDLTNLVHTKYPDLLK-DVKGI--TEETTTGVHNLYKMFRERT 706
K +N + G++ + P LK V GI ++ +G HN+YK FR+ T
Sbjct: 45 KMINKVKKATGEIVAINEISEPKPLKAKVFGIWIRYDSRSGTHNMYKEFRDTT 97
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 27.1 bits (57), Expect = 3.6
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = -2
Query: 705 VLSRNILYKLCTPVVVSSVIPFTSFKRSGYLVWTKFVKSPPSSKIILRGF 556
V RN+L++ CT + + F++ G L + K VK P + + + RGF
Sbjct: 279 VFVRNLLFE-CTEQEL-----YNHFRQFGPLAYAKLVKDPATDRSLGRGF 322
>SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosomal
protein L20a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 27.1 bits (57), Expect = 3.6
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +2
Query: 557 KPLNMILDDGGDLTNLVHTKYPDLLK-DVKGI--TEETTTGVHNLYKMFRERT 706
K +N + G++ + P LK V GI ++ +G HN+YK FR+ T
Sbjct: 45 KMINKVKKATGEIVAINEISEPKPLKAKVFGIWIRYDSRSGTHNMYKEFRDTT 97
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 26.2 bits (55), Expect = 6.4
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +1
Query: 67 SCARERVLQYQVPIYFRYFNKNNLKRKQQVNLPVGISNFVLQ 192
S + +L+ V YFRY + +LK +Q++ L +S+ L+
Sbjct: 665 SVIQNELLRRSVDTYFRYIFQTDLKLEQRIKLLEFLSSDTLR 706
>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 293
Score = 25.8 bits (54), Expect = 8.4
Identities = 18/61 (29%), Positives = 25/61 (40%)
Frame = +1
Query: 247 RNYVSRERNARPYGMSSEICSS*NTQRCQNSRQLTHDSTNSGSY*DFNRIGSRGTMVQQ* 426
R+Y R ++PY S SS S ++ STNS N SR T + +
Sbjct: 90 RSYSGNPRLSKPYASSKLAASSRTASYQAMSYSVSPTSTNSSVATSLNYQSSRETGISKD 149
Query: 427 H 429
H
Sbjct: 150 H 150
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,599,260
Number of Sequences: 5004
Number of extensions: 75684
Number of successful extensions: 200
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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