Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_D15
(904 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0204 - 14844634-14844789,14844882-14845418,14846280-14846888 100 3e-21
05_04_0048 - 17493775-17494431,17494506-17494801,17494851-174949... 31 1.7
05_01_0597 + 5363049-5363429,5363559-5363715,5364390-5364757 30 2.9
03_01_0515 - 3864796-3865425 29 3.8
11_06_0445 - 23679918-23680282,23680415-23683349 29 5.1
09_06_0342 + 22410674-22411060,22412219-22412299,22412376-224125... 29 6.7
09_04_0139 + 15030753-15031208,15031298-15031523,15031599-150319... 29 6.7
01_06_0730 - 31552747-31553088,31553583-31553646,31553743-315538... 28 8.8
>11_04_0204 - 14844634-14844789,14844882-14845418,14846280-14846888
Length = 433
Score = 99.5 bits (237), Expect = 3e-21
Identities = 51/114 (44%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Frame = +2
Query: 272 MPGLMACRRKYAPAKILKGARIAGSLHMTVQTAVLIETLIELGAEVQW-SSSNIYSTQDE 448
MPGLMACR ++ P++ KGARI+GSLH T+Q AVLIETL LG ++
Sbjct: 1 MPGLMACRAEFGPSQPFKGARISGSLHRTIQAAVLIETLTALGRRGPLVLLQHLLHAGPR 60
Query: 449 AAAALVAVGIPIYAWKGETDDEYIWCIEQTLIFPDGKPLNMILDDGGDLTNLVH 610
++AWKGET +EY WC E+ L + G ++I+DDGGD T L+H
Sbjct: 61 RRPPSPRDSAAVFAWKGETLEEYWWCTERCLDWGVGAGPDLIVDDGGDATLLIH 114
Score = 35.5 bits (78), Expect = 0.058
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Frame = +2
Query: 611 TKYPDLLKDVKGITEETTTGVHNLYKMFRERTFKSSCNQR*RFSNKKQFDTVW-M*GVLL 787
+KY + + + G++EETTTGV LY+M K +FD ++ L
Sbjct: 156 SKYRKMKERLVGVSEETTTGVKRLYQMQETGALLFPAINVNDSVTKSKFDNLYGCRHSLP 215
Query: 788 DGIKXQQTX*LPGS-CVLAGYGDV 856
DG+ + G V+ GYGDV
Sbjct: 216 DGLMRATDVMIAGKVAVVCGYGDV 239
>05_04_0048 -
17493775-17494431,17494506-17494801,17494851-17494958,
17495463-17495544,17495561-17495740
Length = 440
Score = 30.7 bits (66), Expect = 1.7
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Frame = +2
Query: 245 KEIMLAEKEMPGLMACRRKYAPAKILKGARIAGSLHMTV------QTAVLIETLIELGAE 406
KE+M E PG++ R + +++ IA LH V QTA L+ + L +
Sbjct: 197 KELMEGVSE-PGVLQSRLSKITSFLVQATSIAAGLHDEVPLQIRGQTAALVTQISGLEQQ 255
Query: 407 VQWSSSNIYSTQDE 448
V+ S + ST+DE
Sbjct: 256 VEELSKKLCSTEDE 269
>05_01_0597 + 5363049-5363429,5363559-5363715,5364390-5364757
Length = 301
Score = 29.9 bits (64), Expect = 2.9
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = +3
Query: 723 INVNDSVTKSNSTLYGCRESCSTESXGNRHXDCREVVYWQVMVTL 857
I+V++S + + +Y C C+ E GN + D ++V+ W+ + L
Sbjct: 169 ISVDESSEEDPNAVYKCNMYCNLEKAGN-NFDMQQVISWRAHMHL 212
>03_01_0515 - 3864796-3865425
Length = 209
Score = 29.5 bits (63), Expect = 3.8
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
Frame = -1
Query: 526 TPNILVISFSLPGIDGYSYGNQC-SCGLVLCTINVTAGPLYLCSQFY*SLNKNRCLYCHV 350
+P V +++ + ++ + C + G L +NV +G CS N L +V
Sbjct: 123 SPVTNVNDYTIQQVGKFAVQSYCLNTGAKLVYVNVVSGQTQPCS----GGGSNYQLVINV 178
Query: 349 *AAGYSGTFEYFSWSIFPTTCHKAWHF 269
A + + F W I TT K W F
Sbjct: 179 AAGVRTAQYSVFVWGILGTTTWKLWSF 205
>11_06_0445 - 23679918-23680282,23680415-23683349
Length = 1099
Score = 29.1 bits (62), Expect = 5.1
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 557 KPLNMILDDGGDLTNLVHTKYPDLLKDV 640
+P + I DG DL N V + +PD + D+
Sbjct: 1007 QPTDEIFQDGMDLHNFVESAFPDQISDI 1034
>09_06_0342 +
22410674-22411060,22412219-22412299,22412376-22412579,
22412765-22412959,22413064-22413228,22413501-22413761,
22413908-22414126,22414285-22414504,22414591-22414613,
22414728-22414766
Length = 597
Score = 28.7 bits (61), Expect = 6.7
Identities = 21/73 (28%), Positives = 35/73 (47%)
Frame = +2
Query: 197 KPPYKIADEKLAEWGRKEIMLAEKEMPGLMACRRKYAPAKILKGARIAGSLHMTVQTAVL 376
+PP + ++ GR+ EKE L +R+ A+IL G R G+ ++ V+ A +
Sbjct: 33 RPP--LQQQQQVGLGRRGRAREEKERTKLRERQRRAITARILAGLRRHGNYNLRVR-ADI 89
Query: 377 IETLIELGAEVQW 415
E + L E W
Sbjct: 90 NEVIAALAREAGW 102
>09_04_0139 +
15030753-15031208,15031298-15031523,15031599-15031981,
15032353-15032685,15032902-15033010,15033089-15033465
Length = 627
Score = 28.7 bits (61), Expect = 6.7
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +2
Query: 578 DDGGDLTNLVHTKYPDLLKDVKGITEETTTGVHNLYKM 691
DD + +L H Y D +KD K E +HN KM
Sbjct: 448 DDDNFIISLDHKHYADHIKDHKADAEYLNKPIHNYSKM 485
>01_06_0730 -
31552747-31553088,31553583-31553646,31553743-31553858,
31553964-31553978
Length = 178
Score = 28.3 bits (60), Expect = 8.8
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +2
Query: 599 NLVHTKYPDLLKDVK-GITEETTTGVHNLYKMFRERTFKSSCNQ 727
N + K P +K+ + ++ TG HN+YK +R+ T + Q
Sbjct: 64 NEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQ 107
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,554,589
Number of Sequences: 37544
Number of extensions: 459523
Number of successful extensions: 1071
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1040
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1069
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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