Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_D14
         (930 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18B5.11c |cds1||replication checkpoint kinase Cds1|Schizosac...    29   1.2  
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo...    28   1.6  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    28   2.2  
SPCC4B3.08 |||C-terminal domain kinase I |Schizosaccharomyces po...    28   2.2  
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    27   3.8  
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c...    27   5.0  
SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|ch...    27   5.0  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    27   5.0  
SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr 3...    26   8.7  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    26   8.7  

>SPCC18B5.11c |cds1||replication checkpoint kinase
           Cds1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 740 FWLFHSAHTCELPLNSSKASSIHWSIF 660
           FW F    +CE+ LN  + S+ H+ I+
Sbjct: 59  FWRFGRHKSCEVVLNGPRVSNFHFEIY 85


>SPAC6G10.07 |||nuclear cap-binding complex large subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 780

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 18/62 (29%), Positives = 32/62 (51%)
 Frame = +2

Query: 473 NGQIISAVSIEEICREIDDIFKSIDRLASATSTLRNRKPDVVQCSISTGELSFDDTIDQI 652
           + QII A+ + +   E+D I +S +   S TS +R     V+ C+ S G  SF   ++  
Sbjct: 527 SSQIIEALRLHKPLEELDIILQSEEIQNSETSAVRL----VMSCAYSLGSRSFSHALNVF 582

Query: 653 DE 658
           ++
Sbjct: 583 EK 584


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 27/112 (24%), Positives = 52/112 (46%), Gaps = 9/112 (8%)
 Frame = +2

Query: 317 DLKKTTFDSAQLLKKVRRKV--ARQLSDKSIIDYNDFIRNLQNN-----EANDQQFFFVN 475
           D  +T  D+  L+ K+  +   A Q+S++ I D  +++ + Q       ++ + Q    +
Sbjct: 451 DWDRTLVDNGALISKLYTETVEAEQMSNR-IDDGLEYVSSSQQELFKLLDSYETQLETFD 509

Query: 476 GQIISAVSIEE--ICREIDDIFKSIDRLASATSTLRNRKPDVVQCSISTGEL 625
           G+  SA+++E        DDI   +DRL     T+ N+  D  +   S  E+
Sbjct: 510 GRATSALNVERERAFGVADDILSRLDRLGEDLGTVINQMNDFSKPDDSISEI 561


>SPCC4B3.08 |||C-terminal domain kinase I |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 218

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = +2

Query: 368 RKVARQLSDKSIIDYNDFIRNLQNNEANDQQFFFVNGQIISAVSIEEICREIDD 529
           RKV + L +K +ID N +   +   EA++Q     +     A+S  +I + I++
Sbjct: 110 RKVLQSLHEKKVIDDNQYKDAMATVEAHEQASKSGDTSTSGAISKNDILKRIEE 163


>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 583

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
 Frame = +2

Query: 386 LSDKSIIDYNDFIRNLQNNEANDQQFFFVNGQIISAVSIEEICREIDDIFKSIDRLASAT 565
           L+D ++ DY   + N  NN  N QQ   V+ +    V +      +   + S+   +S+ 
Sbjct: 207 LADSNMEDYTRAVMNYINNSENTQQ-ASVSPEESQLVMLSRFVFSVASGWVSVLMNSSSA 265

Query: 566 STLRNRK-PDVVQCSISTGELSFDD 637
               N + P  +  ++ +G ++FD+
Sbjct: 266 HQSNNLEFPSSISGNVESGNVAFDE 290


>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 436

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -3

Query: 769 WSNFX*IVTDSGCFILHTLVNFHSTLRKLLLYTGLFFFVY 650
           W  F  ++   G   L    NF + L+++ +Y G  F+VY
Sbjct: 308 WCLFGVLMIARGLIYLALFRNFLNILKRMAIYCGACFWVY 347


>SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 388

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
 Frame = +2

Query: 200 LLRNEQWMKLEEDWKPVDLDEDRTEEDNEPAMTTMLSALDLKKTTFDSAQLLKKVRRKV- 376
           +L+N+ + KL  +   VD   D TE+     +  +L++  L     +   +L+K  R + 
Sbjct: 92  ILKNKDFRKLLNENLHVDFPADLTEDAQRNTVARILNSKQLSDAIRNINSILEKYLRFLN 151

Query: 377 --ARQLSDKSII 406
              ++LSDK  +
Sbjct: 152 PDLQELSDKKAV 163


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +2

Query: 320  LKKTTFDSAQLLKKVRRKVARQLSDKSIIDYNDFIRNLQ 436
            LK+T     +LLKK+  +  + +   SI+ Y  +IR+++
Sbjct: 1739 LKETVKKQEKLLKKLNLRQEQLIPRSSILVYESYIRDIE 1777


>SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 175

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +2

Query: 197 ILLRNEQWMKLEEDWKPVDLDEDRTEEDNEPAM 295
           ++  N      +E WK  D+DED+  +  EP +
Sbjct: 42  VVKENHLHFGFDEKWKTYDVDEDKVLDYLEPKL 74


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1154

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
 Frame = +2

Query: 311 ALD--LKKTTFDSAQLLKKVRRKVARQLSDKSIIDYNDFIRNLQNNEAN---DQQFFFVN 475
           ALD   KK    +  LLK+++ K       K   +++   R ++   A    D ++  + 
Sbjct: 617 ALDTLFKKLPTAAPVLLKRIKTKDQEWRRSKR--EWSKIWRQIEKKNAQAAFDDRYCRIE 674

Query: 476 GQIISAVSIEEICREIDDIFK 538
           G+    +S   I R+IDDI++
Sbjct: 675 GRDRRGLSYSRILRDIDDIYQ 695


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,970,595
Number of Sequences: 5004
Number of extensions: 54930
Number of successful extensions: 178
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)