Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_D11
         (918 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121...    27   3.3  
07_01_0080 + 587674-588510                                             24   4.9  

>10_01_0100 +
           1209424-1209538,1210373-1211073,1211158-1211379,
           1211452-1211878,1212091-1213219,1213623-1213746,
           1214207-1214278,1215480-1215578,1215617-1215640,
           1215704-1215745,1215815-1215895,1215983-1216114,
           1216115-1216196,1216271-1216365,1218499-1218570,
           1218676-1218792,1219379-1219447,1219521-1219587,
           1219886-1220025
          Length = 1269

 Score = 26.6 bits (56), Expect(2) = 3.3
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -3

Query: 418 PKXXTAFPRGLADSLXQXKPPXPPPXP 338
           P+  +  P G A S     PP PPP P
Sbjct: 672 PRSSSRTPTGAATSSKGPPPPPPPPLP 698



 Score = 21.4 bits (43), Expect(2) = 3.3
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = -3

Query: 361 PPXPPPXPXXXN 326
           PP PPP P   N
Sbjct: 732 PPLPPPLPAAAN 743


>07_01_0080 + 587674-588510
          Length = 278

 Score = 24.2 bits (50), Expect(2) = 4.9
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 397 PRGLADSLXQXKPPXPPPXP 338
           PR   D + +  PP PPP P
Sbjct: 80  PRLGGDGMFRRPPPPPPPPP 99



 Score = 23.4 bits (48), Expect(2) = 4.9
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = -3

Query: 361 PPXPPPXPXXXNXSH 317
           PP PPP P     SH
Sbjct: 114 PPPPPPPPLFTRRSH 128


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,964,501
Number of Sequences: 37544
Number of extensions: 237742
Number of successful extensions: 814
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2612387020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)