Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_D10
(921 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc... 29 1.2
SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog Taz1|Schizosacc... 29 1.2
SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyce... 29 1.2
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos... 28 1.6
SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7 |S... 28 2.1
SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 28 2.1
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 27 2.8
SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual 27 4.9
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 27 4.9
SPBC36B7.07 |tlg1||SNARE Tgl1|Schizosaccharomyces pombe|chr 2|||... 27 4.9
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 26 6.5
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual 26 6.5
SPBC29A10.13 |atp7||F0-ATPase subunit D|Schizosaccharomyces pomb... 26 6.5
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce... 26 8.6
>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 762
Score = 28.7 bits (61), Expect = 1.2
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 436 LGRALDVLPRLFQSLXGLAVRVSERSPGDSW 344
+G + L RLF SL GL ++ SPG+ W
Sbjct: 410 VGTVIQGLSRLFSSLYGLRFVPADISPGEVW 440
>SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog
Taz1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 663
Score = 28.7 bits (61), Expect = 1.2
Identities = 28/116 (24%), Positives = 46/116 (39%)
Frame = +2
Query: 350 VSRGALGDANGKAXEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQES 529
VS G + A K L S N+ T + R + K+ L+ + ++ Q
Sbjct: 429 VSLGLVSSALDKITGLL--SADNLSETVSQARDFSHTLSKS---LKSRAKSLSQKEAANR 483
Query: 530 QKLAXKVSSNVQETNEKLAPKIKAAYDDFAKNTQGGDQEDPGGRQRQAVSVDIELS 697
KL K N++ L+ + +DF + +QE G + A+ V IE S
Sbjct: 484 SKLIAKRGDNLRR-EASLSSEQDDLSEDFPPVRESDEQESRSGGRSSAMRVSIERS 538
>SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 238
Score = 28.7 bits (61), Expect = 1.2
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Frame = +2
Query: 365 LGDANGKAXEALEQSRQNIERTAEELRKAHPD---VEKNATALREKLQAAVQNTVQESQK 535
+ +A KA ++LEQ+ + E L K H + E+ + +EKL A ++ + S++
Sbjct: 52 INEAQKKAEKSLEQTEARKQNFTELLEKEHEEQAITEQEIFSFQEKLDAMLKRKQKLSEE 111
Query: 536 L 538
L
Sbjct: 112 L 112
>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
Plc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 899
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 157 PKVAMVRRDAPDFFKDIEHHTKEFHKTLEQQFNSLT 264
P V ++ DFFK + ++ H TL ++ NSL+
Sbjct: 50 PYVGNRKKSEQDFFKMLSSRDRDAHSTLRKRSNSLS 85
>SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 272
Score = 27.9 bits (59), Expect = 2.1
Identities = 17/69 (24%), Positives = 36/69 (52%)
Frame = +2
Query: 383 KAXEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQKLAXKVSSNV 562
K+ + LE S Q +E E + P+V++ +EK ++ V+ +E K+S N+
Sbjct: 132 KSEKPLETS-QKVEIETVETKPGEPEVKQETNLQKEKKESKVKLESKEE-----KISRNL 185
Query: 563 QETNEKLAP 589
+ ++ ++P
Sbjct: 186 RSSSRSISP 194
>SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 419
Score = 27.9 bits (59), Expect = 2.1
Identities = 13/65 (20%), Positives = 30/65 (46%)
Frame = +2
Query: 383 KAXEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQKLAXKVSSNV 562
KA + LE+ ++ E + EE+ H + T+ + + + +QE ++ +
Sbjct: 353 KACKDLEEVSKSYEESREEIEALHETFTEEVTSFQSTKRLKEEKIIQEKSRVDKMIDEYR 412
Query: 563 QETNE 577
Q+ +E
Sbjct: 413 QKLSE 417
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 27.5 bits (58), Expect = 2.8
Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 5/100 (5%)
Frame = +2
Query: 404 QSRQNIERTAEELRKAHPDVEKNATALREKLQAAV-----QNTVQESQKLAXKVSSNVQE 568
Q ++ +ER E LRK D K+ + +AA+ + + E QKL +
Sbjct: 138 QGKEKLEREVENLRK-ELDKYKDLVETEAEKRAAITKEECEKSWLEQQKLYKDMEQENAS 196
Query: 569 TNEKLAPKIKAAYDDFAKNTQGGDQEDPGGRQRQAVSVDI 688
T +KL KI+ + Q + G A S ++
Sbjct: 197 TIQKLTSKIRELQASQLDHDLQASQNESAGLDVNAKSAEV 236
>SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 450
Score = 26.6 bits (56), Expect = 4.9
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -1
Query: 171 HRYLGPDAMQAKRTTNLAAMMYCRETECGGDANR 70
H YL P+A+Q + LA + R+ E +A+R
Sbjct: 132 HNYLTPNALQRQAKERLAQTLGIRDEEVSYEASR 165
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 26.6 bits (56), Expect = 4.9
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = +1
Query: 181 DAPDFFKDIEHHTKEFHKTLEQ--QFNSLTKSKDAQDFSKAW 300
D +F D++ H K FH E+ + + +K D K W
Sbjct: 665 DMKSYFSDLDRHMKYFHAMQEKDAELIEMAFAKKKADVRKEW 706
>SPBC36B7.07 |tlg1||SNARE Tgl1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 225
Score = 26.6 bits (56), Expect = 4.9
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Frame = +2
Query: 560 VQETNEKLAPKIKAAYDDFAKNTQ--GGDQEDPGGRQRQAVSVDIELSHL 703
+ E +E L +KAA + KN++ G D+E+ R+R +DIEL+++
Sbjct: 45 IDELSETLKD-LKAAVEIAMKNSEHFGLDEEELKSRRRFVSELDIELNNI 93
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 26.2 bits (55), Expect = 6.5
Identities = 17/73 (23%), Positives = 37/73 (50%)
Frame = +2
Query: 398 LEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQKLAXKVSSNVQETNE 577
++ Q+IE T L K D+E++ +++ + V + Q+ +++ +Q+T E
Sbjct: 496 MKTQEQSIELT--RLYKQLQDIEEDYENKLMRMEQQWREDVDQLQEYVEEITQELQDTKE 553
Query: 578 KLAPKIKAAYDDF 616
L+ K + DD+
Sbjct: 554 VLSKSSKES-DDY 565
>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1279
Score = 26.2 bits (55), Expect = 6.5
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = -1
Query: 213 VFDVLEEVGSV-ASHHRYL-GPDAMQAKRTTNLAAMMYCRETECGGDANRTATQRSVSKS 40
V +++E+V + +HRYL GP+ + + T ECGG ++T T R +S S
Sbjct: 952 VKNLVEKVIKIDREYHRYLIGPNGSKLQNTIK----------ECGGSTDKTETARLISFS 1001
Query: 39 *G 34
G
Sbjct: 1002 NG 1003
>SPBC29A10.13 |atp7||F0-ATPase subunit D|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 175
Score = 26.2 bits (55), Expect = 6.5
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +2
Query: 398 LEQSRQNIERTAEELRKAHPDVEK 469
+EQ+R E T E++++A P++EK
Sbjct: 126 IEQARPTEEITIEDMKQAVPEIEK 149
>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 512
Score = 25.8 bits (54), Expect = 8.6
Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Frame = +2
Query: 545 KVSSNVQET--NEKLAPKIKAAYD 610
+V N++ET EK A K+KA+YD
Sbjct: 299 EVDLNIEETVLKEKYADKVKASYD 322
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,485,736
Number of Sequences: 5004
Number of extensions: 38436
Number of successful extensions: 157
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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