Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_D08
(865 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11B10.10c |pht1||histone H2A variant|Schizosaccharomyces pom... 155 1e-38
SPAC19G12.06c |hta2||histone H2A beta|Schizosaccharomyces pombe|... 118 8e-28
SPCC622.08c |hta1||histone H2A alpha |Schizosaccharomyces pombe|... 113 3e-26
SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit Dpb3|Schizosa... 31 0.28
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||... 30 0.37
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 27 2.6
SPBC11B10.02c |his3||histidinol-phosphate aminotransferase imida... 26 7.9
>SPBC11B10.10c |pht1||histone H2A variant|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 171
Score = 155 bits (375), Expect = 1e-38
Identities = 84/132 (63%), Positives = 98/132 (74%), Gaps = 6/132 (4%)
Frame = +1
Query: 85 CGTRFKM--GGGK---CG*RFW*SQGES*SQDQLEQ-DFSFPXGRIHRHLKNRTTSHGRV 246
C RFKM GGGK G + GE + FP GR+ R LK +T ++ RV
Sbjct: 26 CNNRFKMMSGGGKGKHVGGKGGSKIGERGQMSHSARAGLQFPVGRVRRFLKAKTQNNMRV 85
Query: 247 GATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAG 426
GA +AVYSAA+LEYLTAEVLELAGNA+KDLKVKRITPRHLQLAIRGDEELD+LI+ATIAG
Sbjct: 86 GAKSAVYSAAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLIRATIAG 145
Query: 427 GGVIPHIHKSLI 462
GGV+PHI+K L+
Sbjct: 146 GGVLPHINKQLL 157
>SPAC19G12.06c |hta2||histone H2A beta|Schizosaccharomyces pombe|chr
1|||Manual
Length = 131
Score = 118 bits (285), Expect = 8e-28
Identities = 66/130 (50%), Positives = 85/130 (65%), Gaps = 1/130 (0%)
Frame = +1
Query: 103 MGGGKCG*RFW*SQGES*SQDQLEQDFSFPXGRIHRHLKNRTTSHGRVGATAAVYSAAIL 282
M GGK G + + +S + +FP GR+HR L+ + RVGA A VY AA+L
Sbjct: 1 MSGGKSGGKA--AVAKSAQSRSAKAGLAFPVGRVHRLLRKGNYAQ-RVGAGAPVYLAAVL 57
Query: 283 EYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSL 459
EYL AE+LELAGNA++D K RI PRHLQLAIR DEEL+ L+ TIA GGV+P+I+ L
Sbjct: 58 EYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVVPNINAHL 117
Query: 460 IGKKGGPGAP 489
+ K+ G G P
Sbjct: 118 LPKQSGKGKP 127
>SPCC622.08c |hta1||histone H2A alpha |Schizosaccharomyces pombe|chr
3|||Manual
Length = 132
Score = 113 bits (272), Expect = 3e-26
Identities = 64/126 (50%), Positives = 82/126 (65%), Gaps = 1/126 (0%)
Frame = +1
Query: 103 MGGGKCG*RFW*SQGES*SQDQLEQDFSFPXGRIHRHLKNRTTSHGRVGATAAVYSAAIL 282
M GGK G + + +S + +FP GR+HR L+ + RVGA A VY AA+L
Sbjct: 1 MSGGKSGGKA--AVAKSAQSRSAKAGLAFPVGRVHRLLRKGNYAQ-RVGAGAPVYLAAVL 57
Query: 283 EYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSL 459
EYL AE+LELAGNA++D K RI PRHLQLAIR DEEL+ L+ TIA GGV+P+I+ L
Sbjct: 58 EYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVVPNINAHL 117
Query: 460 IGKKGG 477
+ K G
Sbjct: 118 LPKTSG 123
>SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit
Dpb3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 199
Score = 30.7 bits (66), Expect = 0.28
Identities = 18/73 (24%), Positives = 34/73 (46%)
Frame = +1
Query: 187 FPXGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 366
FP RI + + G+V V + LE +++ + ++ + KR+T HL
Sbjct: 24 FPVARIKK-IMQADQDVGKVAQVTPVIMSKALELFMQSIIQESCKQTRLHQAKRVTVSHL 82
Query: 367 QLAIRGDEELDSL 405
+ A++ E+ D L
Sbjct: 83 KHAVQSVEQFDFL 95
>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 644
Score = 30.3 bits (65), Expect = 0.37
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 273 RYFGISYSRGFGVGGKCV*RFKSEAYYSSALTTCY 377
+Y G +YS G V GKCV +F + + +T Y
Sbjct: 311 QYLGTNYSNGTAVDGKCVTQFDNVGFLVGTSSTRY 345
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 27.5 bits (58), Expect = 2.6
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = -3
Query: 386 SPLIASCKCRGVIRFTFKS-LDAFPANSKTSAVRYSKIAAE*TAAVAPTRPWLVVLFLRC 210
SPL CKC G IR+ + L + +SK + K E T + + P + + C
Sbjct: 19 SPLFHPCKCTGSIRYVHQECLVEWLGHSKKTHCELCKAKFEFTKVYSESMPRTIPFTILC 78
>SPBC11B10.02c |his3||histidinol-phosphate aminotransferase
imidazole acetol phosphate transaminase
His3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 25.8 bits (54), Expect = 7.9
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +1
Query: 325 SKDLKV-KRITPRHLQLAIRGDEELDSLIKATIAGG 429
+K+L + K +TP ++ + + DE +DSLI+ + G
Sbjct: 69 NKELSITKPLTPDNICMGVGSDEIIDSLIRISCIPG 104
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,459,061
Number of Sequences: 5004
Number of extensions: 69603
Number of successful extensions: 187
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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