Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_D06
         (990 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P45594 Cluster: Cofilin/actin-depolymerizing factor hom...    58   3e-07
UniRef50_Q9VWR1 Cluster: CG6873-PA; n=6; Endopterygota|Rep: CG68...    34   6.5  

>UniRef50_P45594 Cluster: Cofilin/actin-depolymerizing factor
           homolog; n=10; Pancrustacea|Rep:
           Cofilin/actin-depolymerizing factor homolog - Drosophila
           melanogaster (Fruit fly)
          Length = 148

 Score = 58.4 bits (135), Expect = 3e-07
 Identities = 33/67 (49%), Positives = 38/67 (56%)
 Frame = +2

Query: 434 SEASKXXXLFLMSWCPDXDKVDXKMLYSXSFDASEKVPXXXXXXXXXXXXXXXXXQEAVE 613
           SE+SK   LFLMSWCPD  KV  KMLYS SFDA +K                   +EAVE
Sbjct: 81  SESSKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKK-SLVGVQKYIQATDLSEASREAVE 139

Query: 614 KKLRSCD 634
           +KLR+ D
Sbjct: 140 EKLRATD 146


>UniRef50_Q9VWR1 Cluster: CG6873-PA; n=6; Endopterygota|Rep:
           CG6873-PA - Drosophila melanogaster (Fruit fly)
          Length = 148

 Score = 33.9 bits (74), Expect = 6.5
 Identities = 21/59 (35%), Positives = 27/59 (45%)
 Frame = +2

Query: 458 LFLMSWCPDXDKVDXKMLYSXSFDASEKVPXXXXXXXXXXXXXXXXXQEAVEKKLRSCD 634
           L LM WCP   ++  KMLYS +F A  K                   + AVE++LRS D
Sbjct: 89  LILMLWCPTLARIKDKMLYSSTF-AVLKREFPGVQKCIQATEPEEACRNAVEEQLRSLD 146


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 510,069,575
Number of Sequences: 1657284
Number of extensions: 5187221
Number of successful extensions: 4081
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4077
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 93081302556
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)