Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_D06
         (990 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0752 - 27791126-27791167,27791792-27791863,27792771-277928...    32   0.81 
02_05_0221 - 26938764-26938914,26940039-26940361,26940391-26940393     31   1.4  
05_01_0103 + 686770-687017,687120-687270                               29   7.6  

>04_04_0752 -
           27791126-27791167,27791792-27791863,27792771-27792855,
           27792971-27793236,27794117-27794301,27794925-27795018,
           27795193-27795284,27795401-27795539,27796101-27796385
          Length = 419

 Score = 31.9 bits (69), Expect = 0.81
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +2

Query: 458 LFLMSWCPDXDKVDXKMLYSXSFD 529
           +F +SW PD  KV  KMLY+ S D
Sbjct: 349 IFFISWSPDTSKVRSKMLYASSKD 372


>02_05_0221 - 26938764-26938914,26940039-26940361,26940391-26940393
          Length = 158

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 458 LFLMSWCPDXDKVDXKMLYSXSFD 529
           +F +SW PD  +V  KMLY+ S D
Sbjct: 104 IFFISWAPDTSRVRSKMLYASSKD 127


>05_01_0103 + 686770-687017,687120-687270
          Length = 132

 Score = 28.7 bits (61), Expect = 7.6
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 458 LFLMSWCPDXDKVDXKMLYSXSFD 529
           +F ++W PD  +V  KM+Y+ S D
Sbjct: 78  IFFIAWSPDTSRVRSKMIYASSKD 101


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,651,561
Number of Sequences: 37544
Number of extensions: 159996
Number of successful extensions: 143
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2893540780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)