Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_D05
         (882 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc...    33   0.071
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    28   2.0  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    27   4.7  
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    26   8.2  
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo...    26   8.2  
SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr 2|||...    26   8.2  
SPCC1442.02 ||SPCC1450.18|DUF1760 family protein|Schizosaccharom...    26   8.2  

>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
           Lag1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 32.7 bits (71), Expect = 0.071
 Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 5/103 (4%)
 Frame = +1

Query: 409 CFSIHLSVL*CMLFFREYFLDKISKKFHLS---KSRLSALN--ESGQLIVFHLVTLVWGG 573
           CF I   ++     FR   +D + + F L+   ++R   +   E G    ++L     G 
Sbjct: 116 CFPIFWVIV--FTAFRVIVMDYVFRPFVLNWGVRNRKVIIRFCEQGYSFFYYLCFWFLGL 173

Query: 574 DAILREGFIFNISQLWEGYPVHPMSFLLKLWWVVQASYWLHTI 702
                  +  N  +L+E YP + MS L K ++++Q  +WL  I
Sbjct: 174 YIYRSSNYWSNEEKLFEDYPQYYMSPLFKAYYLIQLGFWLQQI 216


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
 Frame = +2

Query: 233 YCFMCCYGFPGWIDGTVYKSHCK-LVHQFTSQCQWSGTNERSAERRTFYL*IWVERCLCR 409
           YC  C    P     + +   CK  ++++   C W+G    +   RTF L ++    L  
Sbjct: 401 YCLKCFQVKP---PRSYHCGACKRCINRYDHHCPWTGNCVGARNHRTFLLFVFTLSTLIP 457

Query: 410 VFLFTCLY 433
           ++ +   Y
Sbjct: 458 IYFYVAFY 465


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +1

Query: 499 KSRLSALNESGQLIVFHLVTLVWGGDAILREGFIFNISQLWEGY 630
           + +L+ LN     ++ H ++ +   D++LR+     ISQLWE Y
Sbjct: 612 QGQLACLNPQ---VLSHCLSHLNSPDSLLRQWACLCISQLWENY 652


>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +1

Query: 517 LNESGQLIVFHLVTLVWGGDAILREGFIFNISQLWEGYPVHPMSFLLKLWWVVQA 681
           LN +    +F L T+     +ILR G+ FN  +    YP    SFL   W+ +++
Sbjct: 197 LNNARYFFLFLLCTIQLLFHSILRLGYHFNALRDMRQYP----SFLRSWWFAIKS 247


>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 735 EWAGRIRNAATAFGFVALAYGLXSNAWE 818
           +W GR+RN+ +    +A+A  L S  W+
Sbjct: 267 KWMGRLRNSKSLMKNLAMARDLWSCGWK 294


>SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 462

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +3

Query: 288 SPIASLFISLHHNVSGVEPTREAPKGEPFTYESGWKD 398
           +P+     SL H  SG+ P  +   G P  +   W D
Sbjct: 149 TPMVRALESLEHVFSGLYPESKRKMGLPVIFTRNWSD 185


>SPCC1442.02 ||SPCC1450.18|DUF1760 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 562

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -2

Query: 761 SISYASCPLIFLYTLEVQFGIVCNQ 687
           S+SY    L+FLY+LE+Q  +  NQ
Sbjct: 501 SLSYIHQTLVFLYSLEIQNLLSQNQ 525


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,955,045
Number of Sequences: 5004
Number of extensions: 88924
Number of successful extensions: 202
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)