Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_D05
(882 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL022716-2|CAA18772.1| 373|Caenorhabditis elegans Hypothetical ... 99 4e-21
AL022716-1|CAA18770.1| 371|Caenorhabditis elegans Hypothetical ... 99 4e-21
U40415-6|AAP68933.1| 329|Caenorhabditis elegans Homolog of yeas... 37 0.017
U42438-8|AAF99867.2| 368|Caenorhabditis elegans Homolog of yeas... 34 0.12
AF105010-1|AAD16893.1| 368|Caenorhabditis elegans LAG1Ce-1 prot... 34 0.12
Z68338-9|CAA92762.2| 2923|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z68338-8|CAA92761.2| 2920|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z54218-6|CAA90960.2| 2923|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z54218-5|CAA90959.2| 2920|Caenorhabditis elegans Hypothetical pr... 31 1.1
AC024741-1|AAK68394.3| 789|Caenorhabditis elegans Hypothetical ... 29 4.4
Z78419-7|CAC42290.1| 1601|Caenorhabditis elegans Hypothetical pr... 29 5.8
AF159144-1|AAF80368.1| 1601|Caenorhabditis elegans RRF-1 protein. 29 5.8
U13643-3|AAA21086.3| 394|Caenorhabditis elegans Brca homolog (t... 28 7.7
AY523518-1|AAR98640.1| 394|Caenorhabditis elegans potential BRC... 28 7.7
>AL022716-2|CAA18772.1| 373|Caenorhabditis elegans Hypothetical
protein C24F3.1b protein.
Length = 373
Score = 99.1 bits (236), Expect = 4e-21
Identities = 51/103 (49%), Positives = 67/103 (65%), Gaps = 2/103 (1%)
Frame = +3
Query: 153 VKPAIGRKTNKNP--PIFSHEFVIQNHADIVSCVVMVFLVGLMVQSTSPIASLFISLHHN 326
VKP G K +K P PI SHEF+IQNH DI+SCVVMVF+VGLM T ++SLFI+ +N
Sbjct: 2 VKPQGGSKASKKPQPPILSHEFIIQNHGDIMSCVVMVFIVGLMFPLTHSLSSLFIAPQYN 61
Query: 327 VSGVEPTREAPKGEPFTYESGWKDACAVFFYSLVCIVMHAILQ 455
+ + + E Y SG D A+FFYS+ IV+HA++Q
Sbjct: 62 GTYTVAVEQGQEREVHGYLSGILDLPAIFFYSVCWIVVHAVVQ 104
Score = 49.6 bits (113), Expect = 3e-06
Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Frame = +1
Query: 454 REYFLDKISKKFHLSKSRLSALNESGQLIVFHLVTLVWGGDAI---LREGFIFNISQLWE 624
+EY LDKISKK HLSK ES + F + ++ + L + +W
Sbjct: 104 QEYGLDKISKKTHLSKVSTFKFGESFHQMFFTVYSIAHAFYIVSERLEDFSEVKSFSVWL 163
Query: 625 GYPV--HPMSFLLKLWWVVQASYWLHTIP 705
GYP MS KL+++ Q SYW+H P
Sbjct: 164 GYPTEHRVMSAAYKLYFIFQISYWIHQFP 192
>AL022716-1|CAA18770.1| 371|Caenorhabditis elegans Hypothetical
protein C24F3.1a protein.
Length = 371
Score = 99.1 bits (236), Expect = 4e-21
Identities = 51/103 (49%), Positives = 67/103 (65%), Gaps = 2/103 (1%)
Frame = +3
Query: 153 VKPAIGRKTNKNP--PIFSHEFVIQNHADIVSCVVMVFLVGLMVQSTSPIASLFISLHHN 326
VKP G K +K P PI SHEF+IQNH DI+SCVVMVF+VGLM T ++SLFI+ +N
Sbjct: 2 VKPQGGSKASKKPQPPILSHEFIIQNHGDIMSCVVMVFIVGLMFPLTHSLSSLFIAPQYN 61
Query: 327 VSGVEPTREAPKGEPFTYESGWKDACAVFFYSLVCIVMHAILQ 455
+ + + E Y SG D A+FFYS+ IV+HA++Q
Sbjct: 62 GTYTVAVEQGQEREVHGYLSGILDLPAIFFYSVCWIVVHAVVQ 104
Score = 53.2 bits (122), Expect = 2e-07
Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Frame = +1
Query: 454 REYFLDKISKKFHLSKSRLSALNESGQLIVFHLVTLVWGGDAILREGFIFN-ISQLWEGY 630
+EY LDKISKK HLSK ES + F + ++ + F+ + +W GY
Sbjct: 104 QEYGLDKISKKTHLSKVSTFKFGESFHQMFFTVYSIAHAFYIVSERLEDFSEVKSVWLGY 163
Query: 631 PV--HPMSFLLKLWWVVQASYWLHTIP 705
P MS KL+++ Q SYW+H P
Sbjct: 164 PTEHRVMSAAYKLYFIFQISYWIHQFP 190
>U40415-6|AAP68933.1| 329|Caenorhabditis elegans Homolog of yeast
longevity geneprotein 2 protein.
Length = 329
Score = 37.1 bits (82), Expect = 0.017
Identities = 12/65 (18%), Positives = 35/65 (53%)
Frame = +1
Query: 499 KSRLSALNESGQLIVFHLVTLVWGGDAILREGFIFNISQLWEGYPVHPMSFLLKLWWVVQ 678
+ + S + E +++ ++ V G +L E +++I++ W +P HP+ + ++ +Q
Sbjct: 82 EKKYSRMAECAMRALYYTISFVCGLYLVLHESHLYDITECWRNWPFHPIPNAVAWYYWIQ 141
Query: 679 ASYWL 693
+++
Sbjct: 142 GGFYI 146
>U42438-8|AAF99867.2| 368|Caenorhabditis elegans Homolog of yeast
longevity geneprotein 1 protein.
Length = 368
Score = 34.3 bits (75), Expect = 0.12
Identities = 15/78 (19%), Positives = 37/78 (47%)
Frame = +1
Query: 496 SKSRLSALNESGQLIVFHLVTLVWGGDAILREGFIFNISQLWEGYPVHPMSFLLKLWWVV 675
S SR + E ++ ++G + +++++ Q W GYP HP+ + ++++
Sbjct: 85 SVSRAKKILECFWRFSYYTFAFLYGLYVMKNSSWLYDVKQCWIGYPFHPVPDTIWWYYMI 144
Query: 676 QASYWLHTIPNCTSNV*R 729
+ ++ + T +V R
Sbjct: 145 ETGFYYSLLIGSTFDVRR 162
>AF105010-1|AAD16893.1| 368|Caenorhabditis elegans LAG1Ce-1
protein.
Length = 368
Score = 34.3 bits (75), Expect = 0.12
Identities = 15/78 (19%), Positives = 37/78 (47%)
Frame = +1
Query: 496 SKSRLSALNESGQLIVFHLVTLVWGGDAILREGFIFNISQLWEGYPVHPMSFLLKLWWVV 675
S SR + E ++ ++G + +++++ Q W GYP HP+ + ++++
Sbjct: 85 SVSRAKKILECFWRFSYYTFAFLYGLYVMKNSSWLYDVKQCWIGYPFHPVPDTIWWYYMI 144
Query: 676 QASYWLHTIPNCTSNV*R 729
+ ++ + T +V R
Sbjct: 145 ETGFYYSLLIGSTFDVRR 162
>Z68338-9|CAA92762.2| 2923|Caenorhabditis elegans Hypothetical protein
T24B8.7b protein.
Length = 2923
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -1
Query: 624 FPKLRDVENETFPEYSITTPYQSYEMEYYKLSRFIE 517
FP+L D+E+ F E SI YQ+ E L+ F E
Sbjct: 1693 FPELPDIEDSMFEEESIRWEYQAREAAIQTLNAFCE 1728
>Z68338-8|CAA92761.2| 2920|Caenorhabditis elegans Hypothetical protein
T24B8.7a protein.
Length = 2920
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -1
Query: 624 FPKLRDVENETFPEYSITTPYQSYEMEYYKLSRFIE 517
FP+L D+E+ F E SI YQ+ E L+ F E
Sbjct: 1690 FPELPDIEDSMFEEESIRWEYQAREAAIQTLNAFCE 1725
>Z54218-6|CAA90960.2| 2923|Caenorhabditis elegans Hypothetical protein
T24B8.7b protein.
Length = 2923
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -1
Query: 624 FPKLRDVENETFPEYSITTPYQSYEMEYYKLSRFIE 517
FP+L D+E+ F E SI YQ+ E L+ F E
Sbjct: 1693 FPELPDIEDSMFEEESIRWEYQAREAAIQTLNAFCE 1728
>Z54218-5|CAA90959.2| 2920|Caenorhabditis elegans Hypothetical protein
T24B8.7a protein.
Length = 2920
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -1
Query: 624 FPKLRDVENETFPEYSITTPYQSYEMEYYKLSRFIE 517
FP+L D+E+ F E SI YQ+ E L+ F E
Sbjct: 1690 FPELPDIEDSMFEEESIRWEYQAREAAIQTLNAFCE 1725
>AC024741-1|AAK68394.3| 789|Caenorhabditis elegans Hypothetical
protein R05G9R.1 protein.
Length = 789
Score = 29.1 bits (62), Expect = 4.4
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 300 SLFISLHHNVSGVEPTREAPKGEPFTYES 386
S FI LHH + ++ + + P PFT++S
Sbjct: 183 SPFIVLHHGGTAIQTSSQPPAFSPFTFQS 211
>Z78419-7|CAC42290.1| 1601|Caenorhabditis elegans Hypothetical
protein F26A3.8 protein.
Length = 1601
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/60 (21%), Positives = 30/60 (50%)
Frame = +1
Query: 451 FREYFLDKISKKFHLSKSRLSALNESGQLIVFHLVTLVWGGDAILREGFIFNISQLWEGY 630
FRE+ + K+ + +L +NE + + +L+ + AI+++ + N Q W+ +
Sbjct: 339 FREFLKEIFPPKYEIVDDKLIDVNEERKFSITYLIECLLSRGAIVKDQLLLN-EQHWKNF 397
>AF159144-1|AAF80368.1| 1601|Caenorhabditis elegans RRF-1 protein.
Length = 1601
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/60 (21%), Positives = 30/60 (50%)
Frame = +1
Query: 451 FREYFLDKISKKFHLSKSRLSALNESGQLIVFHLVTLVWGGDAILREGFIFNISQLWEGY 630
FRE+ + K+ + +L +NE + + +L+ + AI+++ + N Q W+ +
Sbjct: 339 FREFLKEIFPPKYEIVDDKLIDVNEERKFSITYLIECLLSRGAIVKDQLLLN-EQHWKNF 397
>U13643-3|AAA21086.3| 394|Caenorhabditis elegans Brca homolog
(tumor suppressorgene brca1) protein 2 protein.
Length = 394
Score = 28.3 bits (60), Expect = 7.7
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +2
Query: 35 LRFGK*KCHVDGNSCQKIFSGLIISIY*CTV*VNSDENGCKA 160
++FG + HVD C+K SG + IY V + + ENG K+
Sbjct: 182 IKFGD-RIHVDAEVCKKSSSGDVTEIYIDRV-LKNKENGAKS 221
>AY523518-1|AAR98640.1| 394|Caenorhabditis elegans potential
BRCA2-like protein (44.7kD) (3H990) protein.
Length = 394
Score = 28.3 bits (60), Expect = 7.7
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +2
Query: 35 LRFGK*KCHVDGNSCQKIFSGLIISIY*CTV*VNSDENGCKA 160
++FG + HVD C+K SG + IY V + + ENG K+
Sbjct: 182 IKFGD-RIHVDAEVCKKSSSGDVTEIYIDRV-LKNKENGAKS 221
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,891,012
Number of Sequences: 27780
Number of extensions: 502770
Number of successful extensions: 1162
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1162
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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