Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_D03
         (879 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc...    27   2.7  
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom...    27   3.5  
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    26   8.1  

>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
           Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = +1

Query: 76  SLRPGRPTNYDELFGIDGSFRQVS--HRLILGYNTYVFNINSYITTTIVQL 222
           SLRP + +N    +  +G+F  VS  + ++  Y+T    +  ++T TI  L
Sbjct: 132 SLRPAKASNKHVTYSPNGNFLAVSSCNGILYFYDTQTRELIKFLTNTIASL 182


>SPAC31G5.15 |||phosphatidylserine decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 980

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 15/69 (21%), Positives = 32/69 (46%)
 Frame = -1

Query: 543 YTSHLKLSNCLRYNIKEYYIN*YLFNLKSFHESILRYYK*SI*QTKSFQDGISIKCFSFP 364
           ++ ++  +  LR+N+   Y   +LF + +F  +    +K       S  D I++  F+  
Sbjct: 313 FSKNIFRTKWLRHNLNPVYNEKFLFEVGAFESNYDLVFKVVDHDKMSLNDSIAVGSFNVQ 372

Query: 363 DIANESKKL 337
            I N S ++
Sbjct: 373 SIINSSAQV 381


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1142

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -1

Query: 561  VLKYVLYTSHLKLSNCL-RYNIKEYYIN*YLFNLKSFHESI 442
            ++ ++L T  L+    L R N  EYYIN     L SF+  I
Sbjct: 1046 IIPFILLTEILRTGKMLPRLNDVEYYINNVFLFLLSFYSLI 1086


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,115,377
Number of Sequences: 5004
Number of extensions: 59435
Number of successful extensions: 123
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)