Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_D03
         (879 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical p...    29   3.3  
Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.      29   3.3  
U39996-7|AAA81093.1| 1667|Caenorhabditis elegans Temporarily ass...    28   7.7  

>Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical
            protein C47D12.1c protein.
          Length = 4053

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +2

Query: 272  EFKFIVILNKKLLCSLVQINMYNFLDSLAMSGNEKHLIEIPS 397
            +FK +V LN K+L + + +N+ N +    MS     ++ +PS
Sbjct: 1534 KFKCLVELNPKILVTKMAVNLANQMVKYKMSDKISRILSVPS 1575


>Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical protein
            C47D12.1b protein.
          Length = 4061

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +2

Query: 272  EFKFIVILNKKLLCSLVQINMYNFLDSLAMSGNEKHLIEIPS 397
            +FK +V LN K+L + + +N+ N +    MS     ++ +PS
Sbjct: 1540 KFKCLVELNPKILVTKMAVNLANQMVKYKMSDKISRILSVPS 1581


>Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical protein
            C47D12.1a protein.
          Length = 4064

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +2

Query: 272  EFKFIVILNKKLLCSLVQINMYNFLDSLAMSGNEKHLIEIPS 397
            +FK +V LN K+L + + +N+ N +    MS     ++ +PS
Sbjct: 1540 KFKCLVELNPKILVTKMAVNLANQMVKYKMSDKISRILSVPS 1581


>AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.
          Length = 4064

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +2

Query: 272  EFKFIVILNKKLLCSLVQINMYNFLDSLAMSGNEKHLIEIPS 397
            +FK +V LN K+L + + +N+ N +    MS     ++ +PS
Sbjct: 1540 KFKCLVELNPKILVTKMAVNLANQMVKYKMSDKISRILSVPS 1581


>U39996-7|AAA81093.1| 1667|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 177 protein.
          Length = 1667

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -1

Query: 354 NESKKLYIFI*TREHSNFLFKITINLNSFDQTSVIIEKFV 235
           +E  K Y+FI  R H   L K++   N     S+II  FV
Sbjct: 475 SEFDKFYLFISARHHLKELLKLSPLKNMCSSLSIIIVSFV 514


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,835,641
Number of Sequences: 27780
Number of extensions: 321578
Number of successful extensions: 669
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)