Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_D02
         (1046 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   2.9  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    23   3.9  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    22   9.0  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +3

Query: 252 DTRRFPLEAPSXRSPVPTLPLTGYLSAF 335
           D+RR PL     + P P  P+  Y  +F
Sbjct: 76  DSRRLPLRDAVEKRPPPDEPIDDYEPSF 103


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 430 NPPFSPTAAPYPVTIVLSPXR 492
           NPP +      PV +++SP R
Sbjct: 225 NPPNTENNCAQPVVVIMSPTR 245


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = +1

Query: 409 PSWAVCTNPPFSPTAAPYPVTIVLSPXR*HP 501
           P+  +C N P  P   P P+  +  P   +P
Sbjct: 166 PTGFLCNNYPPLPQVPPLPLPPIFPPTMINP 196


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,335
Number of Sequences: 336
Number of extensions: 2699
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 58
effective length of database: 103,097
effective search space used: 29898130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)