Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_D01
         (932 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    34   0.033
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    34   0.033
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.31 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    25   0.99 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   2.2  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 33.9 bits (74), Expect = 0.033
 Identities = 17/53 (32%), Positives = 17/53 (32%)
 Frame = +3

Query: 759  SXGPXPXDAXPXXPPTGPPXXXPPPXXGXQXGXXPXXXXAXXPPPXPPPPGXP 917
            S    P  A    PP   P    PP      G  P    A   PP PPP   P
Sbjct: 1146 SVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAP 1198



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 18/55 (32%), Positives = 20/55 (36%), Gaps = 5/55 (9%)
 Frame = +3

Query: 768  PXPXDAXPXXP-PTGPPXXXPP----PXXGXQXGXXPXXXXAXXPPPXPPPPGXP 917
            P P  A P  P P+G P    P    P      G  P    +   PP P P G P
Sbjct: 1105 PKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAP 1159



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 18/55 (32%), Positives = 20/55 (36%), Gaps = 5/55 (9%)
 Frame = +3

Query: 768  PXPXDAXPXXP-PTG-PPXXXP---PPXXGXQXGXXPXXXXAXXPPPXPPPPGXP 917
            P P    P  P P+G PP   P   PP         P    +   PP P P G P
Sbjct: 1067 PAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAP 1121



 Score = 27.9 bits (59), Expect = 2.2
 Identities = 14/47 (29%), Positives = 15/47 (31%)
 Frame = +3

Query: 768  PXPXDAXPXXPPTGPPXXXPPPXXGXQXGXXPXXXXAXXPPPXPPPP 908
            P P  A P   P+      P P  G      P       PPP   PP
Sbjct: 1153 PAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPP 1199



 Score = 27.1 bits (57), Expect = 3.8
 Identities = 15/53 (28%), Positives = 16/53 (30%)
 Frame = +3

Query: 759  SXGPXPXDAXPXXPPTGPPXXXPPPXXGXQXGXXPXXXXAXXPPPXPPPPGXP 917
            S G  P        P  PP    PP      G  P    +  PP   P  G P
Sbjct: 1175 SSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLP 1227



 Score = 26.2 bits (55), Expect = 6.6
 Identities = 15/51 (29%), Positives = 17/51 (33%), Gaps = 5/51 (9%)
 Frame = +3

Query: 768  PXPXDAXPXXPPTG-----PPXXXPPPXXGXQXGXXPXXXXAXXPPPXPPP 905
            P P +A P   P+      PP    PP      G  P        PP P P
Sbjct: 1192 PPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAP 1242



 Score = 25.8 bits (54), Expect = 8.7
 Identities = 13/40 (32%), Positives = 14/40 (35%)
 Frame = +3

Query: 798  PPTGPPXXXPPPXXGXQXGXXPXXXXAXXPPPXPPPPGXP 917
            PP   P    PP      G  P    +   PP P P G P
Sbjct: 1102 PPVPKPSVAVPPVPAPS-GAPPVPKPSVAAPPVPVPSGAP 1140


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.9 bits (74), Expect = 0.033
 Identities = 18/47 (38%), Positives = 18/47 (38%)
 Frame = +3

Query: 768 PXPXDAXPXXPPTGPPXXXPPPXXGXQXGXXPXXXXAXXPPPXPPPP 908
           P P  A    PP  P    PPP         P    A  PPP PPPP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPP-----PPPGVAGAGPPPPPPPPP 783



 Score = 32.7 bits (71), Expect = 0.076
 Identities = 16/47 (34%), Positives = 16/47 (34%)
 Frame = +3

Query: 768 PXPXDAXPXXPPTGPPXXXPPPXXGXQXGXXPXXXXAXXPPPXPPPP 908
           P P    P   P   P   P P  G      P    A   PP PPPP
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 31.9 bits (69), Expect = 0.13
 Identities = 14/38 (36%), Positives = 14/38 (36%)
 Frame = +3

Query: 798 PPTGPPXXXPPPXXGXQXGXXPXXXXAXXPPPXPPPPG 911
           PP  PP    P          P       PPP PPPPG
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPG 769



 Score = 26.2 bits (55), Expect = 6.6
 Identities = 16/53 (30%), Positives = 16/53 (30%)
 Frame = +3

Query: 768 PXPXDAXPXXPPTGPPXXXPPPXXGXQXGXXPXXXXAXXPPPXPPPPGXPXXA 926
           P P  A     P   P   PPP      G  P           PPPP  P  A
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAP-IMGGPPPPPPPPGVAGAGPPPPPPPPPA 784



 Score = 26.2 bits (55), Expect = 6.6
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +3

Query: 765 GPXPXDAXPXXPPTGPPXXXPPP 833
           GP P    P     GPP   PPP
Sbjct: 760 GPPPPPPPPGVAGAGPPPPPPPP 782


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 30.7 bits (66), Expect = 0.31
 Identities = 15/44 (34%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
 Frame = +3

Query: 789 PXXPPTGPPXXXPPPXXGXQXGXXPXXXXAXXPPPXP-PPPGXP 917
           P  PP  P     PP         P    A  PPP P P P  P
Sbjct: 444 PAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAP 487



 Score = 29.1 bits (62), Expect = 0.94
 Identities = 21/84 (25%), Positives = 22/84 (26%)
 Frame = +3

Query: 666 PAXPXGQSXRXRXAXGXXXXRPKTXAXGXXXSXGPXPXDAXPXXPPTGPPXXXPPPXXGX 845
           P  P   S     A      RP         + G  P           PP   PPP    
Sbjct: 290 PPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPP---PPPPRSN 346

Query: 846 QXGXXPXXXXAXXPPPXPPPPGXP 917
             G  P        PP PPP   P
Sbjct: 347 AAGSIPLPPQGRSAPPPPPPRSAP 370



 Score = 26.2 bits (55), Expect = 6.6
 Identities = 16/64 (25%), Positives = 17/64 (26%), Gaps = 1/64 (1%)
 Frame = +3

Query: 729 PKTXAXGXXXSXGPXPXDAXPXXPPTGPPXXXPPPXXGXQXGXXPXXXXAXXPPPXPP-P 905
           P     G        P    P  PP+ PP   P        G           P  PP P
Sbjct: 401 PALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLP 460

Query: 906 PGXP 917
            G P
Sbjct: 461 AGMP 464


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.0 bits (52), Expect(2) = 0.99
 Identities = 12/33 (36%), Positives = 12/33 (36%)
 Frame = +3

Query: 810 PPXXXPPPXXGXQXGXXPXXXXAXXPPPXPPPP 908
           PP    PP         P       PPP PPPP
Sbjct: 167 PPPSFQPPSAAAPATSLPSDYNP--PPPPPPPP 197



 Score = 22.2 bits (45), Expect(2) = 0.99
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 888 PPXPPPPGXP 917
           PP PPPP  P
Sbjct: 238 PPPPPPPTLP 247


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 16/38 (42%), Positives = 16/38 (42%)
 Frame = +3

Query: 798 PPTGPPXXXPPPXXGXQXGXXPXXXXAXXPPPXPPPPG 911
           PP  PP   PPP      G  P        PP PPPPG
Sbjct: 5   PPGNPPPPPPPP------GFEPPSQ-----PPPPPPPG 31


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.140    0.465 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,406,637
Number of Sequences: 5004
Number of extensions: 15125
Number of successful extensions: 129
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)